Release Notes for RDP 7.0 (July 15, 1998)
                 *****************************************

This file describes the changes that occur in the listed directories with
the 7.0 release of the RDP.

In this document,
    directory names are indicated as:    <directory name>
                                         ++++++++++++++++

                                               +++++++++++++++++++++++
    subdirectory names are indicated as:       + <subdirectory name> +
                                               +++++++++++++++++++++++

    and file names contained within the subdirectory are indicated as:

                                                *******************
                                                **  <file name>  **
                                                *******************

++++++++++++
+ LSU_rRNA +
++++++++++++
No changes have occurred for the aligned or unaligned LSU data.

+++++++++++++++
+  unaligned  +
+++++++++++++++
This directory includes lsu entries in UNALIGNED GenBank format only.
See the unaligned/00README file for more information.

+++++++++++++++
+  sequences  +
+++++++++++++++
The directories (sequences) and subdirectories (A-Z) 
contain the unaligned LSU sequences in individual files with
the file name following the format of <RDP shortid>_gb or <LOCUS>_gb.
For example, the unaligned sequence for RDP shortid Tc.celer is in the
directory /unaligned/sequences/T and the file name is Tc.celer_gb. RDP
shortids which begin with a lower case letter are in the same
subdirectory as RDP shortids which begin with a capitalized letter.

++++++++++++
+ SSU_rRNA +
++++++++++++
New sequences have been added to all three SSU alignments. A listing
of new and changed sequences occurs in the alignments directory
section.

AE2 alignment files are no longer being created beginning with Release
7.0. This is because the number of sequences is larger than what
can be used with current versions of the AE2 editor. AE2 files of
subsets of data can still be obtained for the near future from the RDP
mail and WWW servers.

For all *.alpha and *.phylo files, the sequences have been numbered to
correspond to the order in the respective phylogenetic tree.  These
numbers are _NOT_ RDP accession numbers. The respective number from
the SSU_*.* files also exists in the corresponding SSU_rep_*.phylo file.
This index number can be used to quickly identify organisms on the
respective phylogenetic tree.  This number is _NOT_ a permanent, fixed
number; it will be different for future trees or even for subtrees
created from the Release 7.0 trees.

The SSU_Unal data set has been updated. Subdirectories (sequences)
in the alignments and unaligned directories have been updated to
contain files for each individual sequence. See the respective sections
in the 00RELEASE_NOTES.7.0 file.

Continuing with Release 6.0, statistics and headings (taxonomic node
numbers and names only) for the phylogenetic listings
of the SSU data are available in the respective SSU_*.phylo.stats and
SSU_*.phylo.headings files.

With Release 7.0, the creation of representative data sets for the
SSU_Euk and SSU_Mito alignments has occurred. See the SSU_rep_Euk.phylo
and SSU_rep_Mito.phylo files for the specific sequences included in the
representative data sets.

With Release 7.0, two new types of trees for each SSU alignment are
available in the three tree formats (newick, PostScript, and
ascii/printable). A tree containing the representative data set for each
alignment is in the SSU_*.rep.* file. The SSU_*.taxnodes.* files are
phylogenetic trees that include each taxonomic node name which contains
at least one rRNA sequence. The SSU_*.taxnodes.* files are intended to
serve as minimalist trees for that alignment, and thus do not include a
branch on the tree for each taxonomic node listed in the
SSU_*.phylo.headings files. To see the name for the taxonomic node at a
higher level than what exists in that particular tree, consult the 
respective SSU_*.phylo or SSU_*.phylo.headings files.

******************************
**  SSU_Euk.phylo.headings  **
******************************
A file containing only the taxonomic node numbers and names for the
SSU_Euk alignment.

*******************************
**  SSU_Mito.phylo.headings  **
*******************************
A file containing only the taxonomic node numbers and names for the
SSU_Mito alignment.

*******************************
**  SSU_Prok.phylo.headings  **
*******************************
A file containing only the taxonomic node numbers and names for the
SSU_Prok alignment.

***************************
**  SSU_Euk.phylo.stats  **
***************************
A file containing statistics about each taxonomic node for the
SSU_Euk alignment.

****************************
**  SSU_Mito.phylo.stats  **
****************************
A file containing statistics about each taxonomic node for the
SSU_Mito alignment.

****************************
**  SSU_Prok.phylo.stats  **
****************************
A file containing statistics about each taxonomic node for the
SSU_Prok alignment.

********************
**  SSU_Unal.acc  **
********************
This file provides a listing of GenBank ACCESSION number and GenBank
LOCUS name or RDP shortid in accession order for the unaligned small
subunit (SSU) ribosomal RNA sequence collection.

**********************
**  SSU_Unal.alpha  **
**********************
This file provides a listing of the GenBank LOCUS name or RDP shortid and
the DESCRIPTION line or organism name; it is strongly recommended that
additional identification of the corresponding data be done in the
GenBank or aligned RDP databases. For this release, 22326 sequences of
12S-16S-18S size were included.

*************************
**  SSU_rep_Euk.phylo  **
*************************
The SSU_rep_Euk.phylo has been created and contains 140 organisms.

**************************
**  SSU_rep_Mito.phylo  **
**************************
The SSU_rep_Mito.phylo has been created and contains 76 organisms.

**************************
**  SSU_rep_Prok.phylo  **
**************************
The SSU_rep_Prok.phylo has been updated and remains at 98 organisms.

++++++++++++++
+ alignments +
++++++++++++++
New sequences have been added to all three SSU alignments. See the
respective data file section for a listing of the new and changed
sequences.

The directory (sequences) and subdirectories (A-Z) contain the SSU
sequences in individual files with the file name following the format
of <RDP shortid>_gb. Sequences which exist in the SSU_Prok alignment
and overlap with the SSU_Euk and SSU_Mito alignment files are 
exceptions to this rule, e.g., E.coli, Rhb.legum6, Trit.aes_M, etc.

******************
**  SSU_Euk.gb  **
******************
The number of sequences included in the SSU_Euk.gb (small subunit
eukaryotic organisms - GenBank format) file increases from 437 (436
eukaryotic and 1 prokaryotic sequence used as a reference and outlier)
to 2055 (2054 eukaryotic and 1 prokaryotic sequence used as a reference
and outlier).
(2 sequences were deleted; 1620 sequences were added.)
(RDP shortids and organism names of 410 sequences remain the
same as in Release 6.0, 25 ids/names have changes.)

The characters '~' and '-' represent alignment gap characters.
The character '.' represents missing data.
The character 'N' represents the presence of a nucleotide of
undetermined composition.

See the SSU_rRNA/SSU_Euk.alpha file for more information about the
following new organisms:

        RDP short-ID          Organism (genus species)
        ------------   -----------------------------------------
        Abai.scand     Austrobaileya scandens
        Abed.herbr     Abedus herberti
        Abie.lasio     Abies lasiocarpa
        Abob.tenui     Abobra tenuifolia
        Acac.fimbr     Acacia fimbriata
        Acau.rugos     Acaulospora rugosa
        Acau.spino     Acaulospora spinosa
        Accy.curva     Actinocyclus curvatulus
        Acic.schen     Acicularia schenkii
        Aclo.take      Aciculosporium take
        Acnt.cast2     Acanthamoeba castellanii
        Acnt.cast3     Acanthamoeba castellanii
        Acnt.cast4     Acanthamoeba castellanii
        Acnt.cast5     Acanthamoeba castellanii
        Acnt.cast6     Acanthamoeba castellanii
        Acnt.cast7     Acanthamoeba castellanii
        Acnt.cast8     Acanthamoeba castellanii
        Acnt.grif2     Acanthamoeba griffini
        Acnt.griff     Acanthamoeba griffini
        Acnt.pale2     Acanthamoeba palestinensis
        Acnt.ppha2     Acanthamoeba polyphaga
        Acnt.ppha3     Acanthamoeba polyphaga
        Acnt.pphag     Acanthamoeba polyphaga
        Acnt.rhyso     Acanthamoeba rhysodes
        Acnt.royre     Acanthamoeba royreba
        Acnt.sp1       Acanthamoeba sp.
        Acnt.sp2       Acanthamoeba sp.
        Acnt.sp3       Acanthamoeba sp.
        Acnt.sp4       Acanthamoeba sp.
        Acor.cala2     Acorus calamus
        Acor.calam     Acorus calamus
        Acrm.alter     Acremonium alternatum
        Acrm.chrys     Acremonium chrysogenum
        Acrm.kilie     Acremonium kiliense
        Acrm.rutil     Acremonium rutilum
        Acrm.strct     Acremonium strictum
        Acrs.spSAG     Acrosiphonia sp.
        Acrt.pisu3     Acyrthosiphon pisum
        Acta.actab     Acetabularia acetabulum
        Acta.crenl     Acetabularia crenulata
        Acta.denta     Acetabularia dentata
        Acta.major     Acetabularia major
        Actb.oxycd     Arceuthobium oxycedri
        Actb.pendn     Arceuthobium pendens
        Adan.seric     Adenanthos sericeus
        Adin.radd2     Adiantum raddianum
        Adin.raddi     Adiantum raddianum
        Adlg.sp        Adelges sp.
        Adri.glabr     Adriana glabrata
        Aede.albo2     Aedes albopictus
        Aede.punct     Aedes punctor
        Aeol.albic     Aeolothrips albicinctus
        Agct.hypha     Agaricostilbum hyphaenes
        Agon.mcarp     Agonandra macrocarpa
        Agrc.bisp2     Agaricus bisporus
        Agrc.bispo     Agaricus bisporus
        Ajll.capsl     Ajellomyces capsulatus
        Akeb.quin2     Akebia quinata
        Akeb.quina     Akebia quinata
        Albu.vulpe     Albula vulpes
        Albz.julbr     Albizzia julibrissin
        Alce.atths     Alcedo atthis
        Alcy.gelat     Alcyonidium gelatinosum
        Alep.flavi     Alepis flavida
        Alip.japon     Analipus japonicus
        Allm.macro     Allomyces macrogynus
        Alrd.duge2     Aleurodicus dugesii
        Alrd.duges     Aleurodicus dugesii
        Altn.alter     Alternaria alternata
        Altn.brcae     Alternaria brassicae
        Altn.brcol     Alternaria brassicicola
        Altn.rapha     Alternaria raphani
        Alxn.margl     Alexandrium margalefeii
        Alxn.minut     Alexandrium minutum
        Alxn.ostnf     Alexandrium ostenfeldii
        Alxn.tamar     Alexandrium tamarense
        Ambl.macul     Amblyomma maculatum
        Ambr.platy     Ambrosiozyma platypodis
        Amia_calva     Amia calva
        Amsp.cali2     Amblyospora californica
        Amsp.sp1       Amblyospora sp.
        Amtt.formo     Amentotaxus formosana
        Anas_platy     Anas platyrhynchos
        Anda.rupst     Andreaea rupestris
        Andc.aust2     Androctonus australis
        Andc.austr     Androctonus australis
        Andp.visco     Antidaphne viscoidea
        Anfl.plica     Ahnfeltia plicata
        Anhr.carne     Anisochrysa carnea
        Anot.furcl     Anotrichium furcellatum
        Anph.albim     Anopheles albimanus
        Anpr.haemo     Anophyroides haemophila
        Ansr.anse2     Anser anser
        Antc.agres     Anthoceros agrestis
        Antc.laevi     Anthoceros laevis
        Antd.serra     Antedon serrata
        Antp.kurog     Anthopleura kurogane
        Antu.hodgs     Anthus hodgsoni
        Aond.auran     Aonidiella aurantii
        Apdn.radia     Apedinella radians
        Aphp.squam     Amphipholis squamata
        Aphy.sterc     Aphysiostroma stercorarium
        Apnm.latum     Aponomma latum
        Apsm.probo     Apusomonas proboscidea
        Aptn.albfr     Apteronotus albifrons
        Aptn.leprh     Apteronotus leptorhynchus
        Aqlg.vulgr     Aquilegia vulgaris
        Aqrs.remi2     Aquarius remigis
        Aqrs.remig     Aquarius remigis
        Arab.thal2     Arabidopsis thaliana
        Arbc.lixul     Arbacia lixula
        Arbc.punct     Arbacia punctulata
        Arca_noae      Arca noae
        Arcc.anoph     Aureococcus anophagefferens
        Arcr.excel     Araucaria excelsa
        Args.persi     Argas persicus
        Arps.erina     Archaeopsylla erinacei
        Arsc.congs     Areschougia congesta
        Arst.gigan     Aristolochia gigantea
        Arst.tomnt     Aristolochia tomentosa
        Arun.gigan     Arundinaria gigantea
        Ascb.lineo     Ascobolus lineolatus
        Asch.cyane     Aeschna cyanea
        Asco.apis2     Ascosphaera apis
        Asim.trlba     Asimina triloba
        Aspc.bullo     Asperococcus bullosus
        Aspe.awamo     Aspergillus awamori
        Aspe.flav2     Aspergillus flavus
        Aspe.flavu     Aspergillus flavus
        Aspe.fumi2     Aspergillus fumigatus
        Aspe.fumi3     Aspergillus fumigatus
        Aspe.nidul     Aspergillus nidulans
        Aspe.nige2     Aspergillus niger
        Aspe.niger     Aspergillus niger
        Aspe.oryza     Aspergillus oryzae
        Aspe.psiti     Aspergillus parasiticus
        Aspe.sojae     Aspergillus sojae
        Aspe.tamar     Aspergillus tamarii
        Aspe.terre     Aspergillus terreus
        Astc.astac     Astacus astacus
        Asth.owstn     Asthenosoma owstoni
        Astn.glacl     Asterionellopsis glacilia
        Astr.amure     Asterias amurensis
        Astr.forbe     Asterias forbesi
        Atkn.hyxyl     Atkinsonella hypoxylon
        Atrc.angus     Atrichum angustatum
        Atrc.undul     Atrichum undulatum
        Atrn.pecti     Atrina pectinata
        Audo.dasya     Audouinella dasyae
        Aulc.ambig     Aulacoseira ambigua
        Aulc.dista     Aulacoseira distans
        Aurl.auri2     Aurelia aurita
        Aurl.aurit     Aurelia aurita
        Aurm.lagun     Aureomonas lagunensis
        Auxt.zuff2     Auxarthron zuffianum
        Auxt.zuffi     Auxarthron zuffianum
        Aven.sativ     Avena sativa
        Babs.bovi5     Babesia bovis
        Babs.cani2     Babesia canis
        Babs.divr2     Babesia divergens
        Babs.divr3     Babesia divergens
        Babs.divr4     Babesia divergens
        Babs.divrg     Babesia divergens
        Babs.micro     Babesia microti
        Babs.odoco     Babesia odocoilei
        Babs.spBos     Babesia sp.
        Balg.carno     Balanoglossus carnosus
        Baln.fungo     Balanophora fungosa
        Balu.eburn     Balanus eburneus
        Barc.lngfl     Barclaya longifolia
        Bauh.galpn     Bauhinia galpinii
        Bemi.tabac     Bemisia tabaci
        Bens.cilia     Bensingtonia ciliata
        Bens.ingol     Bensingtonia ingoldii
        Bens.inter     Bensingtonia intermedia
        Bens.misca     Bensingtonia miscanthi
        Bens.musae     Bensingtonia musae
        Bens.nagan     Bensingtonia naganoensis
        Bens.phyll     Bensingtonia phylladus
        Bens.subro     Bensingtonia subrosea
        Bens.yamat     Bensingtonia yamatoana
        Bens.yucc2     Bensingtonia yuccicola
        Bens.yucci     Bensingtonia yuccicola
        Bero.cucum     Beroe cucumis
        Bero.ovata     Beroe ovata
        Betu.papyf     Betula papyrifera
        Blan.arist     Balansia aristidae
        Blan.hengs     Balansia henningsiana
        Blan.obtct     Balansia obtecta
        Blan.sclro     Balansia sclerotica
        Blan.strng     Balansia strangulans
        Blch.brasl     Blechnum brasiliense
        Blcr.culi2     Blastocrithidia culicis
        Blcr.culic     Blastocrithidia culicis
        Blln.rigid     Bellonella rigida
        Blmr.grami     Blumeria graminis
        Blst.emrs2     Blastocladiella emersonii
        Bngi.atrop     Bangia atropurpurea
        Bois.trivt     Boisea trivittatus
        Bonm.hamif     Bonnemaisonia hamifera
        Boql.trfol     Boquila trifoliata
        Born.nitid     Bornetella nitida
        Bors.sppNC     Boreus sp.
        Bosm.lrost     Bosmina longirostris
        Botr.lunar     Botrychium lunaria
        Bphl.annul     Boophilus annulatus
        Brcn.plica     Brachionus plicatilis
        Brnd.purpr     Berndtia purpurea
        Brne.packr     Branchinecta packardi
        Brnt.bened     Barentsia benedeni
        Brrr.succl     Bourreria succulenta
        Brsn.schrb     Brasenia schreberi
        Brss.lyrif     Brissopsis lyrifera
        Brym.argnt     Bryum argenteum
        Bsdb.ranar     Basidiobolus ranarum
        Btph.occid     Batophora occidentalis
        Btph.oerst     Batophora oerstedii
        Btrs.rhodi     Botryosphaeria rhodina
        Btrs.ribis     Botryosphaeria ribis
        Btry.braun     Botryococcus braunii
        Bull.croce     Bullera crocea
        Bull.dendr     Bullera dendrophila
        Bull.globo     Bullera globospora
        Bull.miyag     Bullera miyagiana
        Bull.oryza     Bullera oryzae
        Bull.palba     Bullera pseudoalba
        Bull.varbl     Bullera variabilis
        Buxs.semp2     Buxus sempervirens
        Bybl.linif     Byblis liniflora
        Cabo.carol     Cabomba caroliniana
        Caca.dissm     Cacama dissimilis
        Caen.brigg     Caenorhabditis briggsae
        Caen.reman     Caenorhabditis remanei
        Caen.vulgr     Caenorhabditis vulgaris
        Caln.spB14     Calonympha sp.
        Calp.rangf     Callophyllis rangiferina
        Cals.lancl     Callistachys lanceolata
        Camo.anoml     Campostoma anomalum
        Camr.micro     Camarops microspora
        Cand.albi2     Candida albicans
        Cand.ernob     Candida ernobii
        Cand.xesto     Candida xestobii
        Canj.lepto     Cansjera leptostachya
        Card.sinic     Carduelis sinica
        Cari.prsis     Carios puertoricensis
        Carp.phyll     Carpopeltis phyllophora
        Cars.moros     Carausius morosus
        Cbct.atrat     Colobocentrotus atratus
        Ccbd.pityo     Cucurbidothis pityophila
        Ccbt.berbr     Cucurbitaria berberidis
        Ccbt.elong     Cucurbitaria elongata
        Cclb.htstr     Cochliobolus heterostrophus
        Cclb.sativ     Cochliobolus sativus
        Ccld.austr     Chlorocladus australasicus
        Cdyc.capit     Cordyceps capitata
        Cdyc.intmd     Cordyceps intermedia
        Cera.fusus     Ceratium fusus
        Cerm.macil     Ceramium macilentum
        Cerm.rubru     Ceramium rubrum
        Cerp.septn     Cercophora septentrionalis
        Cert.siliq     Ceratonia siliqua
        Cett.diphn     Cettia diphone
        Chca.sp1       Chaca sp.
        Chco.echin     Chlorococcum echinozygotum
        Chco.hypno     Chlorococcum hypnosporum
        Chco.oleof     Chlorococcum oleofaciens
        Chco.spSes     Chlorococcum sp.
        Chcy.minor     Choricystis minor
        Chdr.crisp     Chondrus crispus
        Chla.spica     Chloranthus spicatus
        Chlb.patul     Chelonibia patula
        Chmd.penic     Chamaedoris peniculum
        Chmo.spWC      Chaetomorpha sp.
        Chmp.affin     Champia affinis
        Chno.chano     Chanos chanos
        Chor.tomen     Chorda tomentosa
        Chpe.manil     Champereia manillana
        Chra.TAMPS     Chara sp.
        Chra.aust2     Chara australis
        Chra.austr     Chara australis
        Chra.conni     Chara connivens
        Chra.curti     Chara curtissii
        Chra.hispd     Chara hispida
        Chra.horne     Chara hornemannii
        Chra.preis     Chara preisii
        Chss.parvm     Chrysosporium parvum
        Chtc.didym     Chaetoceros didymus
        Chtc.rostr     Chaetoceros rostratus
        Chtc.sp        Chaetoceros sp.
        Chth.fragl     Chthamalus fragilis
        Chtm.glob2     Chaetomium globosum
        Chtm.globo     Chaetomium globosum
        Chys.iowen     Chrysosplenium iowense
        Circ.corda     Circaea cordata
        Cits.auran     Citrus aurantium
        Clcm.tric2     Calicium tricolor
        Clcm.tricl     Calicium tricolor
        Cldp.albi2     Cladophora albida
        Cldp.albid     Cladophora albida
        Cldp.caten     Cladophora catenata
        Cldp.coelo     Cladophora coelothrix
        Cldp.liebe     Cladophora liebetruthii
        Cldp.pellu     Cladophora pellucida
        Cldp.plcdo     Cladophora pellucidoidea
        Cldp.proli     Cladophora prolifera
        Cldp.rupes     Cladophora rupestris
        Cldp.seric     Cladophora sericea
        Cldp.socia     Cladophora socialis
        Cldp.vagab     Cladophora vagabunda
        Clds.cldsp     Cladosporium cladosporioides
        Clim.viren     Climacostomum virens
        Clmn.pmeci     Chilomonas paramecium
        Clmn.pmecn     Chilomonas paramecium -- nucleomorph
        Clms.hasta     Chlamys hastata
        Clmt.rehdr     Clematis rehderiana
        Clmy.dysos     Chlamydomonas dysosmos
        Clmy.humic     Chlamydomonas humicola
        Clmy.moewu     Chlamydomonas moewusii
        Clmy.monad     Chlamydomonas monadina
        Clmy.mutab     Chlamydomonas mutabilis
        Clmy.nival     Chlamydomonas nivalis
        Clmy.radia     Chlamydomonas radiata
        Clnt.vilos     Calantica villosa
        Clph.infus     Ciliophrys infusionum
        Clpm.pergr     Colpomenia peregrina
        Clpp.membr     Cladophoropsis membranacea
        Clpp.zolli     Cladophoropsis zollingerii
        Clrl.elli2     Chlorella ellipsoidea
        Clrl.fusc2     Chlorella fusca
        Clrl.fusc3     Chlorella fusca
        Clrl.hspha     Chlorella homosphaera
        Clrl.lutvA     Chlorella luteoviridis
        Clrl.lutvB     Chlorella luteoviridis
        Clrl.mira2     Chlorella mirabilis
        Clrl.sacc2     Chlorella saccharophila
        Clrl.soro3     Chlorella sorokiniana
        Clrl.soro4     Chlorella sorokiniana
        Clrl.sp        Chlorella sp.
        Clrl.spSsh     Chlorella sp.
        Clrl.zofi2     Chlorella zofingiensis
        Cltp.arizn     Clastoptera arizonana
        Cltx.wilsn     Cephalotaxus wilsoniana
        Clup.harng     Clupea harengus
        Clvc.paspa     Claviceps paspali
        Clvc.purpr     Claviceps purpurea
        Clyc.flrd2     Calycanthus floridus
        Clyc.flrda     Calycanthus floridus
        Clyc.occdn     Calycanthus occidentalis
        Cmdr.umbel     Comandra umbellata
        Cncr.irror     Cancer irroratus
        Colo.antqr     Colocasia antiquorum
        Conc.conic     Conocephalum conicum
        Coom.sp1       Chroomonas sp.
        Coom.sp2       Chroomonas sp.
        Copt.trifl     Coptis trifolia
        Corl.offic     Corallina officinalis
        Cors.marit     Corollospora maritima
        Cort.wirth     Corethrella wirthi
        Cory.crass     Corynaea crassa
        Cosm.botry     Cosmarium botrytis
        Cost.cost2     Costaria costata
        Cpha.fragr     Cephaloascus fragrans
        Cphc.furcl     Cephalocystis furcellata
        Cphc.lueco     Cephalocystis leucobotrys
        Cphy.thali     Caulophyllum thalictroides
        Cpog.argut     Calypogeia arguta
        Cprn.mansn     Capronia mansonii
        Cprn.pilos     Capronia pilosella
        Cras.gigan     Crassadoma gigantea
        Crdc.erect     Cordylecladia erecta
        Crdn.korea     Crossodonthina koreana
        Crit.fasc5     Crithidia fasciculata
        Crit.oncpl     Crithidia oncopelti
        Crny.octon     Coronympha octonaria
        Crou.atten     Crouania attenuata
        Crpm.phi_n     Cryptomonas phi -- nucleomorph
        Crpt.japon     Cryptomeria japonica
        Crsp.parv5     Cryptosporidium parvum
        Crsp.wrair     Cryptosporidium wrairi
        Crtc.fimb3     Ceratocystis fimbriata
        Crtc.fimbr     Ceratocystis fimbriata
        Crtc.vires     Ceratocystis virescens
        Crtn.undul     Cryptonemia undulata
        Crto.alba      Ceratocystiopsis alba
        Crto.falca     Ceratocystiopsis falcata
        Crto.prote     Ceratocystiopsis proteae
        Cryn.cuben     Cryphonectria cubensis
        Cryn.havan     Cryphonectria havanensis
        Cryn.paras     Cryphonectria parasitica
        Cryn.radic     Cryphonectria radicalis
        Csmc.saxon     Cosmocladium saxonicum
        Cspr.halim     Ceriosporopsis halima
        Cssd.mitis     Cassidulus mitis
        Csts.austr     Castanospermum australe
        Cthr.criop     Corethron criophilum
        Ctmy.serra     Ctenomyces serratus
        Ctrx.cotrn     Coturnix coturnix
        Ctst.coron     Centrostephanus coronatus
        Cucl.satur     Cuculus saturatus
        Cucm.melo      Cucumis melo
        Cucr.pepo      Cucurbita pepo
        Cudo.confu     Cudonia confusa
        Culx.trirh     Culex tritaeniorhynchus
        Curd.flabe     Curdiea flabellata
        Curv.brach     Curvularia brachyspora
        Cusc.grono     Cuscuta gronovii
        Cycs.revol     Cycas revoluta
        Cydc.sp1       Cylindrocystis sp.
        Cyld.glauc     Cyclidium glaucoma
        Cyld.porca     Cyclidium porcatum
        Cymp.vboss     Cymopolia van bosseae
        Cymt.belgi     Cymatosira belgica
        Cynp.parad     Cyanophora paradoxa
        Cypr.carpi     Cyprinus carpio
        Cyrl.racfl     Cyrilla racemiflora
        Cysp.sp        Cyclospora sp.
        Cytn.ruber     Cytinus ruber
        Cytt.darwn     Cyttaria darwinii
        Dald.concn     Daldinia concentrica
        Daph.galea     Daphnia galeata
        Dasa.baill     Dasya baillouviana
        Dats.glomr     Datisca glomerata
        Dauc.carot     Daucus carota
        Dcai.farge     Decaisnea fargesii
        Dchl.retic     Dictyochloropsis reticulata
        Dcks.antar     Dicksonia antarctica
        Dcop.confu     Dactylopius confusus
        Dcrc.imbrc     Dacrycarpus imbricatus
        Dcrn.lnear     Dicranopteris linearis
        Dctn.pavon     Dictyonema pavonia
        Dctr.eximi     Dicentra eximia
        Dcty.specl     Dictyocha speculum
        Dems.ligu2     Desmarestia ligulata
        Dems.ligul     Desmarestia ligulata
        Dent.fragl     Dientamoeba fragilis
        Devl.ramen     Devaleraea ramentacea
        Devp.elega     Developayella elegans
        Dias.sp        Diastylis sp.
        Dict.disc2     Dictyostelium discoideum
        Dide.setos     Diadema setosum
        Dill.alata     Dillenia alata
        Dils.carno     Dilsea carnosa
        Dipr.phasl     Diaporthe phaseolarum
        Disg.picts     Discoglossus pictus
        Dity.brght     Ditylum brightwelli
        Dixn.grise     Dixonielloa grisea
        Dkkr.anoml     Dekkera anomala
        Dncp.kizuk     Dendrocopos kizuki
        Dndg.leuco     Dendrographa leucophaea
        Dndr.clava     Dendrophthora clavata
        Dndt.varia     Dendrotrophe varians
        Dpda.albid     Dipodascus albidus
        Dplt.furca     Diplatia furcata
        Drcy.salmo     Dermocystidium salmonis
        Drcy.spSal     Dermocystidium sp.
        Drim.aroma     Drimys aromatica
        Drim.wint2     Drimys winteri
        Drim.wintr     Drimys winteri
        Drmt.ander     Dermacentor andersoni
        Drmt.margi     Dermacentor marginatus
        Dros.mela3     Drosophila melanogaster
        Dsch.sp1       Distichodus sp.
        Dsph.insig     Dasyphloea insignis
        Dspr.virgn     Diospyros virginiana
        Dsyt.rumin     Dasytricha ruminantium
        Dthd.hippo     Dothidea hippophaeos
        Dthd.inscu     Dothidea insculpta
        Dtrc.honig     Ditrichomonas honigbergi
        Dtry.disci     Diatrype disciformis
        Duch.indic     Duchesnea indica
        Dysm.nbrev     Dysmicoccus neobrevipes
        Ebrc.ambig     Eubrachion ambiguum
        Eccr.sili2     Ectocarpus siliculosus
        Eccr.silic     Ectocarpus siliculosus
        Echc.corda     Echinocardium cordatum
        Echd.cordf     Echinodorus cordefollus
        Echn.escul     Echinus esculentus
        Ecmm.almoi     Eucommia almoides
        Ecnd.bispr     Echinodiscus bisperforatus
        Ecph.punct     Echiophis punctifer
        Ecyz.salmn     Enterocytozoon salmonis
        Edot.tuber     Echinodothis tuberiformis
        Eimi.mitis     Eimeria mitis
        Eimi.niesc     Eimeria nieschulzi
        Eimi.tenel     Eimeria tenella
        Eise.fetid     Eisenia fetida
        Elae.umbel     Elaeagnus umbellata
        Elch.fucic     Elachista fucicola
        Elop.hwaii     Elops hawaiiensis
        Embz.rusti     Emberiza rustica
        Embz.varbl     Emberiza variabilis
        Emcl.minim     Emericellopsis minima
        Emcl.terri     Emericellopsis terricola
        Emil.huxl2     Emiliania huxleyi
        Ench.ferox     Encephalartos ferox
        Encl.muric     Endocladia muricata
        Enco.aberr     Encope aberrans
        Encz.cuni4     Encephalitozoon cuniculi
        Encz.cuni5     Encephalitozoon cuniculi
        Encz.cuni6     Encephalitozoon cuniculi
        Encz.cuni7     Encephalitozoon cuniculi
        Encz.cuni8     Encephalitozoon cuniculi
        Encz.hell2     Encephalitozoon hellem
        Endm.fibul     Endomyces fibuliger
        Engl.wdfrd     Englerina woodfordioides
        Enth.gyros     Endothia gyrosa
        Entm.dispa     Entamoeba dispar
        Entm.gingi     Entamoeba gingivalis
        Entm.hist4     Entamoeba histolytica
        Entm.hist5     Entamoeba histolytica
        Entm.hist6     Entamoeba histolytica
        Entm.hist7     Entamoeba histolytica
        Entm.hist8     Entamoeba histolytica
        Entp.colum     Entrophospora columbiana
        Entp.sp        Entrophospora sp.
        Epch.amarl     Epichloe amarillians
        Epch.bacon     Epichloe baconii
        Epch.festu     Epichloe festucae
        Epch.typh3     Epichloe typhina
        Epdm.flocc     Epidermophyton floccosum
        Ephd.antis     Ephedra antisyphilitica
        Ephd.distc     Ephedra distachya
        Ephd.sinic     Ephedra sinica
        Ephd.tweed     Ephedra tweediana
        Ephm.spNCE     Ephemera sp.
        Ephr.pulch     Euphorbia pulcherrima
        Epil.angst     Epilobium angustifolium
        Epsc.sp        Ectopsocidae sp.
        Epym.wilsn     Epymenia wilsonis
        Eqst.hyem2     Equisetum hyemale
        Eqst.hyeml     Equisetum hyemale
        Eqst.robus     Equisetum robustum
        Ercl.sp        Erythrocladia sp.
        Erco.podag     Erythrocolon podagricum
        Erds.verti     Ernodesmis verticillata
        Eret.schbr     Endoreticulatus schubergi
        Eria.drege     Erianthemum dregei
        Erms.ferti     Eremascus fertilis
        Ertn.varia     Erythroneura variabilis
        Ertr.carne     Erythrotrichia carnea
        Ethr.tuber     Elaphrothrips tuberculatus
        Euch.denti     Eucheuma denticulata
        Euch.isifr     Eucheuma isiforme
        Euci.trib2     Eucidaris tribuloides
        Euci.tribu     Eucidaris tribuloides
        Eucm.antar     Eucampia antarctica
        Eufl.uhlig     Eufolliculina uhligi
        Eugp.rotun     Euglypha rotunda
        Eupl.aedi2     Euplotes aediculatus
        Eupn.javan     Eupenicillium javanicum
        Eupt.plyan     Euptelea polyandra
        Eurh.hians     Eurhynchium hians
        Eusc.varie     Euscelidius variegatus
        Eusm.wundr     Eusimonia wunderlichi
        Euya.ferox     Euryale ferox
        Exca.bidwl     Exocarpos bidwillii
        Exph.derm2     Exophiala dermatitidis
        Exph.derm3     Exophiala dermatitidis
        Exph.derma     Exophiala dermatitidis
        Exph.jean2     Exophiala jeanselmei
        Exph.jeans     Exophiala jeanselmei
        Exph.mansn     Exophiala mansonii
        Farl.molli     Farlowia mollis
        Fced.nrcis     Ficedula narcissina
        Feld.felli     Fellodistomum fellis
        Filo.flor2     Filobasidium floriforme
        Flls.zelan     Fellaster zelandiae
        Fnsc.pedro     Fonsecaea pedrosoi
        Forf.spNCF     Forficula sp.
        Frgl.stria     Fragilaria striatula
        Frnc.sonch     Francoa sonchifolia
        Frng.mntfr     Fringilla montifringilla
        Fssb.brasi     Fossombronia brasiliensis
        Fssb.pusil     Fossombronia pusilla
        Fuch.trphl     Fuchsia triphylla
        Fucs.gardn     Fucus gardneri
        Funa.hymet     Funaria hygrometrica
        Furc.lumbr     Furcellaria lumbricalis
        Furg.bloch     Furgasonia blochmanni
        Gadu.morh2     Gadus morhua
        Gadu.morhu     Gadus morhua
        Gaid.punct     Gaiadendron punctatum
        Gall.gall4     Gallus gallus
        Galm.geotr     Galactomyces geotrichum
        Gard.tubrf     Gardneriella tuberifera
        Gelt.ocula     Gelastocoris oculatus
        Geni.sptae     Genicularia spirotaenia
        Getp.cymos     Geitonoplesium cymosum
        Geuk.demis     Geukensia demissa
        Ggro.papua     Gongrosira papuasica
        Ggsp.albid     Gigaspora albida
        Ggsp.gigan     Gigaspora gigantea
        Giar.inte2     Giardia intestinalis
        Giar.lamb2     Giardia lamblia
        Giar.lamb3     Giardia lamblia
        Giar.sp        Giardia sp.
        Gigt.crass     Gigartina crassicaulis
        Gili.sp        Gilia sp.
        Gink.bilo2     Ginkgo biloba
        Gink.bilob     Ginkgo biloba
        Glcc.nosto     Glaucocystis nostochinearum
        Glci.palma     Glaucidium palmatum
        Glcr.ameri     Glycera americana
        Gldl.bckrv     Gladiolus buckerveldii
        Gldm.pusil     Gelidium pusillum
        Gldm.vagum     Gelidium vagum
        Glge.ather     Glugea atherinae
        Gllr.melln     Galleria mellonella
        Glmr.cingu     Glomerella cingulata
        Gloi.frutc     Gloioderma fruticulosa
        Glom.BR212     Glomus sp.
        Glom.SA101     Glomus sp.
        Glom.manih     Glomus manihotis
        Glom.moss2     Glomus mosseae
        Glom.mosse     Glomus mosseae
        Glom.versi     Glomus versiforme
        Glom.vesic     Glomus vesiculiferum
        Glpl.furca     Gleiopeltis furcata
        Gltl.planc     Gloeotilopsis planctonica
        Gltt.pyram     Glottidia pyramidata
        Glyc.max       Glycine max
        Glzl.auran     Glaziella aurantiaca
        Gnll.arnot     Ginalloa arnottiana
        Gntm.ula       Gnetum ula
        Grac.chile     Gracilaria chilensis
        Grac.corne     Gracilaria cornea
        Grac.lema3     Gracilaria lemaneiformis
        Grac.pacif     Gracilaria pacifica
        Grac.sp        Gracilaria sp.
        Grac.verr2     Gracilaria verrucosa
        Grac.verr3     Gracilaria verrucosa
        Grac.verr4     Gracilaria verrucosa
        Grac.verr5     Gracilaria verrucosa
        Grac.verr6     Gracilaria verrucosa
        Grac.verr7     Gracilaria verrucosa
        Grac.verr8     Gracilaria verrucosa
        Grbr.sp        Gruberia sp.
        Grce.atrop     Graphocephalus atropunctata
        Grcl.oryz2     Gracilariophila oryzoides
        Grcl.oryz3     Gracilariophila oryzoides
        Grcl.oryzo     Gracilariophila oryzoides
        Grcp.leman     Gracilariopsis lemaneiformis
        Grcp.spNCa     Gracilariopsis sp.
        Grcp.spUK2     Gracilariopsis sp.
        Grcp.spUK      Gracilariopsis sp.
        Grdi.aqua2     Gordius aquaticus
        Grdi.aquat     Gordius aquaticus
        Grff.globu     Griffithsia globulifera
        Grff.monil     Griffithsia monilis
        Grpo.cylin     Graphiola cylindrica
        Grpo.phoen     Graphiola phoenicis
        Grtl.fili2     Grateloupia filicina
        Grtl.filic     Grateloupia filicina
        Gsmt.laven     Geosmithia lavendula
        Gsph.pyril     Geosiphon pyriforme
        Gssy.hirst     Gossypium hirsutum
        Gyma.petal     Gymnoascoideus petalosporus
        Gymd.galth     Gymnodinium galatheanum
        Gymd.smplx     Gymnodinium simplex
        Gymd.varia     Gymnodinium varians
        Gymn.clavi     Gymnosporangium clavipes
        Gymo.niten     Gymnoconia nitens
        Gyrm.escul     Gyromitra esculenta
        Gzyg.acule     Gonatozygon aculeatum
        Hals.gland     Halosaccion glandiforme
        Haly.plana     Halymenia plana
        Hart.vrmi2     Hartmannella vermiformis
        Hart.vrmi3     Hartmannella vermiformis
        Hart.vrmi4     Hartmannella vermiformis
        Hauy.elgan     Hauya elegans
        Hbas.purpr     Helicobasidium purpureum
        Hchy.caten     Hyphochytrium catenoides
        Hcrl.spGJS     Hypocrella sp.
        Hdrn.macph     Hydrangea macrophylla
        Hdyc.sp        Hedycarya sp.
        Hdyo.arbor     Hedyosmum arborescens
        Hech.micrn     Heuchera micrantha
        Helo.cayen     Helosis cayennensis
        Hept.ephel     Hepatus epheliticus
        Herm.maria     Herpetomonas mariadeanei
        Herm.megas     Herpetomonas megaseliae
        Herm.musc2     Herpetomonas muscarum
        Herm.saml2     Herpetomonas samuelpessoai
        Herm.samlp     Herpetomonas samuelpessoai
        Hgas.pycnd     Heterogastridium pycnidioideum
        Hiod.aloso     Hiodon alosoides
        Hlbl.latif     Holboellia latifolia
        Hlcd.egram     Heliocidaris erythrogramma
        Hlcd.tcula     Heliocidaris tuberculata
        Hlsp.mdset     Halosphaeriopsis mediosetigera
        Hlth.karny     Hoplothrips karnyi
        Hmgr.avell     Hamigera avellanea
        Hmml.virgn     Hamamelis virginiana
        Hmpi.sangu     Haemopis sanguisuga
        Hmtr.hookr     Haplomitrium hookeri
        Hnsp.uvarm     Hanseniaspora uvarum
        Holl.sinec     Holleya sinecauda
        Homo_sapi3     Homo sapiens
        Homo_sapi5     Homo sapiens
        Hord.vulgr     Hordeum vulgare
        Host.japon     Hosta japonica
        Hpec.imber     Hypecoum imberba
        Hphy.inerm     Haemaphysalis inermis
        Hphy.punct     Haemaphysalis punctata
        Hplg.ander     Haplogloia andersonii
        Hpls.nlsn2     Haplosporidium nelsoni
        Hpsp.amaur     Hypsipetes amaurotis
        Hrst.thomp     Hirsutella thompsonii
        Hrtr.diffu     Herpotrichia diffusa
        Hrtr.junip     Herpotrichia juniperi
        Hsph.appnd     Halosphaeria appendiculata
        Hspt.incis     Histiopteris incisa
        Hstr.conci     Heisteria concinna
        Htel.nigri     Hypentelium nigricans
        Htrc.ildef     Heterocapsa ildefina
        Htrc.niei      Heterocapsa niei
        Htty.corda     Houttuynia cordata
        Hupz.lucid     Huperzia lucidulum
        Hupz.taxif     Huperzia taxifolia
        Hxmt.sp        Hexamita sp.
        Hxyl.atrro     Hypoxylon atroroseum
        Hyal.dromd     Hyalomma dromedarii
        Hyal.lusit     Hyalomma lusitanicum
        Hycn.sp1       Hydrocynus sp.
        Hycr.lute2     Hypocrea lutea
        Hycr.lutea     Hypocrea lutea
        Hycr.palli     Hypocrea pallida
        Hycr.schwn     Hypocrea schweinitzii
        Hydn.afric     Hydnora africana
        Hydr.lttrl     Hydra littoralis
        Hyds.canad     Hydrastis canadensis
        Hylp.muell     Hypolepis muelleri
        Hypg.dolsa     Hypogastrura dolsana
        Hypm.plypr     Hypomyces polyporinus
        Hytp.sever     Hysteropterum severini
        Ichs.giga2     Ichthyosporidium giganteum
        Ichs.giga3     Ichthyosporidium giganteum
        Ichs.sp1       Ichthyosporidium sp.
        Icph.hofer     Ichthyophonus hoferi
        Icth.multf     Ichthyophthirius multifiliis
        Idsp.austr     Idiospermum australiense
        Ilic.sglbs     Iliacantha subglobosa
        Illc.flrdn     Illicium floridanum
        Illc.prflr     Illicium parviflorum
        Impt.palid     Impatiens palida
        Infe.gerar     Indigofera gerardiana
        Inmi.aggre     Inermisia aggregata
        Ipom.heder     Ipomoea hederacea
        Iset.engel     Isoetes engelmannii
        Isol.sp1       Isolona sp.
        Isop.latif     Isopogon latifolius
        Isph.tasmn     Isophysis tasmanica
        Ixod.affin     Ixodes affinis
        Ixod.ricin     Ixodes ricinus
        Jung.leian     Jungermannia leiantha
        Junp.ashei     Juniperus ashei
        Junp.chinn     Juniperus chinensis
        Klbm.flcc2     Klebsormidium flaccidum
        Klvm.plspr     Kluyveromyces polysporus
        Kndo.malvn     Kondoa malvinella
        Kngh.excel     Knightia excelsa
        Koel.panic     Koelreuteria paniculata
        Kppp.alvrz     Kappaphycus alvarezii
        Krmt.pupuk     Kermatia pupukensis
        Krsl.compl     Korthalsella complanata
        Krsl.lndsy     Korthalsella lindsayi
        Lact.sativ     Lactuca sativa
        Lapg.rosea     Lapageria rosea
        Laud.borea     Lauderia borealis
        Lbry.pyrif     Leptobryum pyriforme
        Lcan.disp2     Lecanora dispersa
        Lcan.dispr     Lecanora dispersa
        Lcdd.laurl     Leucodendron laureolum
        Lddr.elong     Lodderomyces elongisporus
        Ldrf.hypog     Langsdorffia hypogaea
        Leat.diffr     Leathesia difformis
        Leis.adler     Leishmania adleri
        Leis.aethi     Leishmania aethiopica
        Leis.bras2     Leishmania braziliensis
        Leis.bras3     Leishmania braziliensis
        Leis.bras4     Leishmania braziliensis
        Leis.dono2     Leishmania donovani
        Leis.dono3     Leishmania donovani
        Leis.herri     Leishmania herreri
        Leis.infan     Leishmania infantum
        Leis.majo2     Leishmania major
        Leis.mexi2     Leishmania mexicana
        Leis.mexi3     Leishmania mexicana
        Leis.tare2     Leishmania tarentolae
        Leis.tare3     Leishmania tarentolae
        Leis.tropi     Leishmania tropica
        Leot.lubri     Leotia lubrica
        Lgnd.giga2     Lagenidium giganteum
        Libn.emarg     Libinia emarginata
        Lign.laevi     Lignincola laevis
        Ligr.cunei     Ligaria cuneifolia
        Limu.plyph     Limulus polyphemus
        Line.sp        Lineus sp.
        Ling.lingu     Lingula lingua
        Linm.peren     Linum perenne
        Linr.vulgr     Linaria vulgaris
        Litb.forfi     Lithobius forficatus
        Lmpr.palma     Lamprometra palmata
        Lmpt.macro     Lamprothamnium macropogon
        Lmpt.papul     Lamprothamnium papulosum
        Lnac.abiet     Lecanactis abietina
        Lnch.hirsu     Lonchitis hirsuta
        Lnic.conch     Lanice conchilega
        Lomt.austr     Lomentaria australis
        Lomt.baily     Lomentaria baileyana
        Lopz.hirsu     Lopezia hirsuta
        Lorn.europ     Loranthus europaeus
        Lpas.anati     Lepas anatifera
        Lpdd.elong     Lepidapedon elongatum
        Lpdd.rachi     Lepidapedon rachion
        Lpdi.inund     Lycopodiella inundatum
        Lpdr.squam     Lepidodermella squammata
        Lphs.crena     Lophiostoma crenatum
        Lpod.annot     Lycopodium annotinum
        Lpod.phleg     Lycopodium phlegmaria
        Lpod.trist     Lycopodium tristachyum
        Lpot.procr     Lepiota procera
        Lprn.escu3     Lycopersicon esculentum
        Lpso.osseu     Lepisosteus osseus
        Lpsp.bicol     Leptosphaeria bicolor
        Lpsp.doli2     Leptosphaeria doliolum
        Lpsp.dolio     Leptosphaeria doliolum
        Lpsp.macu2     Leptosphaeria maculans
        Lpsp.macul     Leptosphaeria maculans
        Lpsp.mscop     Leptosphaeria microscopica
        Lpsp.nodor     Leptosphaeria nodorum
        Lptt.acerv     Leptothorax acervorum
        Lpur.spthl     Lepuropetalon spathulatum
        Lqda.styrc     Liquidambar styraciflua
        Lrdd.tulip     Liriodendron tulipifera
        Lrdz.biter     Lardizabala biternata
        Lthx.lutea     Leiothrix lutea
        Ludw.peplo     Ludwigia peploides
        Lupi.angst     Lupinus angustifolius
        Lutz.shann     Lutzomyia shannoni
        Lxde.magns     Loxodes magnus
        Lxde.stria     Loxodes striatus
        Lxth.texan     Loxothylacus texanus
        Lygs.hespe     Lygus hesperus
        Lysn.excrp     Lysiana exocarpi
        Lytc.pictu     Lytechinus pictus
        Lytc.varie     Lytechinus variegatus
        Lyth.salic     Lythrum salicaria
        Macd.trnfl     Macadamia ternifolia
        Magl.grdnf     Magnolia grandiflora
        Malp.cocci     Malpighia coccigera
        Mant.squam     Mantoniella squamata
        Marc.polym     Marchantia polymorpha
        Masc.stell     Mastocarpus stellatus
        Mbio.hufel     Macrobiotus hufelandi
        Mbio.spCBC     Macrobiotus sp.
        Mcas.trigo     Microascus trigonosporus
        Mcer.sp        Monocercomonas sp.
        Mchl.varia     Mimachlamys varia
        Mcic.cassi     Magicicada cassini
        Mclv.mucid     Multiclavula mucida
        Mdea.carno     Mychodea carnosa
        Mdic.boerg     Microdictyon boergesenii
        Mdis.sptsb     Meiodiscus spetsbergensis
        Melo.prcar     Meloe proscarabaeus
        Menp.mercn     Menippe mercenaria
        Meom.ventr     Meoma ventricosa
        Metp.conto     Metopus contortus
        Mets.bicus     Metschnikowia bicuspidata
        Metz.furca     Metzgeria furcata
        Mglo.macsp     Mycogloea macrospora
        Mglp.atlnt     Megalops atlanticus
        Mgta.sp        Mougeotia sp.
        Mimo.spggz     Mimosa speggazzinii
        Mixi.osmun     Mixia osmundae
        Mkil.fragr     Mkilua fragrans
        Mlbr.alblu     Malbranchea albolutea
        Mlbr.dend2     Malbranchea dendritica
        Mlbr.dendr     Malbranchea dendritica
        Mlbr.filmn     Malbranchea filamentosa
        Mlbr.gypse     Malbranchea gypsea
        Mlph.rhois     Melaphis rhois
        Mlsp.fallx     Melanospora fallax
        Mlsr.varia     Melosira varians
        Mlth.obtus     Melanthalia obtusata
        Mndr.kinse     Mindarus kinseyi
        Mniu.hornu     Mnium hornum
        Mnlk.zapot     Manilkara zapota
        Mntc.soltr     Monticola solitarius
        Mntr.unifl     Monotropa uniflora
        Molf.molfi     Moliniformis moliniformis
        Molg.citri     Molgula citrina
        Molg.compl     Molgula complanata
        Molg.echin     Molgula echinosiphonica
        Molg.manha     Molgula manhattensis
        Molg.occid     Molgula occidentalis
        Molg.ocula     Molgula oculata
        Molg.provi     Molgula provisionalis
        Molg.socia     Molgula socialis
        Molg.tecti     Molgula tectiformis
        Mort.plycp     Mortierella polycephala
        Mphy.sp1       Megaphyllum sp.
        Mqrt.guian     Miquartia guianensis
        Mrch.elata     Morchella elata
        Mrch.escul     Morchella esculenta
        Mrmb.ingel     Merimbla ingelheimense
        Mrus.alba      Morus alba
        Msdd.brchy     Misodendron brachystachyum
        Mspl.globl     Mespilia globulus
        Mspm.canad     Menispermum canadensis
        Mspr.audou     Microsporum audouinii
        Mspr.canis     Microsporum canis
        Mtae.caldr     Mesotaenium caldariorum
        Mtdv.extra     Metadevescovina extranea
        Mtdv.pspir     Metadevescovina polyspira
        Mtha.kuetz     Microthamnion kuetzingianum
        Mtsq.glypt     Metasequoia glyptostroboides
        Mucr.muced     Mucor mucedo
        Mucr.raman     Mucor ramannianus
        Murl.auran     Muriella aurantica
        Mus_muscu2     Mus musculus
        Mus_muscu4     Mus musculus
        Mycc.albo2     Mycocalicium albonigrum
        Mycc.albon     Mycocalicium albonigrum
        Myco.mycpp     Mycosphaerella mycopappi
        Mymc.astgm     Myrmecia astigmatica
        Mymc.biato     Myrmecia biatorellae
        Mymc.bisec     Myrmecia bisecta
        Myrg.atra2     Myriogenospora atramentosa
        Myrg.atram     Myriogenospora atramentosa
        Myti.calif     Mytilus californianus
        Myti.edul2     Mytilus edulis
        Myti.eduli     Mytilus edulis
        Myti.galp2     Mytilus galloprovincialis
        Myti.galpr     Mytilus galloprovincialis
        Myti.tros2     Mytilus trossulus
        Myti.tros3     Mytilus trossulus
        Myti.tros4     Mytilus trossulus
        Myti.tross     Mytilus trossulus
        Nand.domes     Nandina domestica
        Ncmx.frnt2     Neocallimastix frontalis
        Ncos.vsin2     Neocosmospora vasinfecta
        Ncos.vsinf     Neocosmospora vasinfecta
        Ndsn.nigra     Nadsoniella nigra
        Nect.cinbr     Nectria cinnabarina
        Nect.vilio     Nectria vilior
        Neml.helmi     Nemalion helminthoides
        Neom.dumnt     Neomeris dumentosa
        Nest.umbel     Nestronia umbellula
        Ngei.nagi      Nageia nagi
        Nico.rusti     Nicotiana rustica
        Nimb.effus     Nimbospora effusa
        Nitl.flexl     Nitella flexilis
        Nitz.pungm     Nitzschia pungens
        Nitz.pungp     Nitzschia pungens
        Nizy.austr     Nizymenia australis
        Njas.guadl     Najas guadaliensis
        Nlec.irreg     Neolecta irregularis
        Nlec.vitel     Neolecta vitellina
        Nlmb.lutea     Nelumbo lutea
        Nlmb.nucif     Nelumbo nucifera
        Nmph.odrat     Nymphaea odorata
        Nmph.tuber     Nymphaea tuberosa
        Nohe.umium     Nohea umiumi
        Nose.apis1     Nosema apis
        Nose.apis2     Nosema apis
        Nose.bomb2     Nosema bombycis
        Nose.bomb3     Nosema bombycis
        Nose.bomb4     Nosema bombycis
        Nose.bomby     Nosema bombycis
        Nose.ceran     Nosema ceranae
        Nose.corne     Nosema corneum
        Nose.furna     Nosema furnacalis
        Nose.oulem     Nosema oulemae
        Nose.spNIS     Nosema sp.
        Nose.trich     Nosema trichoplusiae
        Nose.vesp2     Nosema vespula
        Nose.vespu     Nosema vespula
        Notc.nodos     Nothocladus nodosus
        Notu.exili     Noturus exilis
        Nphr.altis     Nephrotoma altissima
        Nphs.oliva     Nephroselmis olivacea
        Nrei.limba     Nereis limbata
        Nrhy.pmydi     Neoechinorhynchus pseudemydis
        Nsar.fisch     Neosartorya fischeri
        Nspr.BPA1      Neospora sp.
        Nspr.cani1     Neospora caninum
        Nspr.cani2     Neospora caninum
        Nspr.cani3     Neospora caninum
        Nspr.cani4     Neospora caninum
        Nspr.spBPA     Neospora sp.
        Ntth.leiop     Notothixos leiophyllus
        Ntth.subar     Notothixos subaureus
        Ntyp.coeno     Neotyphodium coenophialum
        Ntyp.uncin     Neotyphodium uncinatum
        Nuph.lteum     Nuphar luteum
        Obol.dryop     Obolarina dryophila
        Obtr.georg     Obertrumia georgiana
        Ocar.erian     Orthocarpus erianthus
        Ochd.celtc     Onchidella celtica
        Ocht.eryth     Ochetostoma erythrogrammon
        Octl.lowei     Octolasmis lowei
        Odll.trogu     Odiellus troguloides
        Odts.chine     Odontosoria chinensis
        Oeno.speci     Oenothera speciosa
        Oiko.sp        Oikopleura sp.
        Okng.utahn     Okanagana utahensis
        Olar.hespr     Olarius hesperinus
        Olax_aphyl     Olax aphylla
        Ombr.subtr     Ombrophytum subterraneum
        Omph.umbel     Omphalina umbellifera
        Onrh.kstch     Oncorhynchus kisutch
        Opdr.mnsem     Ophiodeira monosemeia
        Opgl.petio     Ophioglossum petiolatum
        Opgn.caten     Ophryoglena catenula
        Ophc.rex       Ophichthus rex
        Ophi.wendt     Ophiocoma wendtii
        Ophp.japon     Ophioplocus japonicus
        Ophs.110_2     Ophiostoma sp.
        Ophs.colif     Ophiostoma coliferum
        Ophs.crass     Ophiostoma crassivaginata
        Ophs.fasci     Ophiostoma fasciata
        Ophs.ips       Ophiostoma ips
        Ophs.longi     Ophiostoma longisporum
        Ophs.minbi     Ophiostoma minuta-bicolor
        Ophs.minim     Ophiostoma minima
        Ophs.minu2     Ophiostoma minuta
        Ophs.minut     Ophiostoma minuta
        Ophs.parva     Ophiostoma parva
        Ophs.pilif     Ophiostoma piliferum
        Ophs.ranac     Ophiostoma ranaculosum
        Ophs.retus     Ophiostoma retusum
        Ophs.sp110     Ophiostoma sp.
        Ophs.sp237     Ophiostoma sp.
        Ophs.sp855     Ophiostoma sp.
        Opil.ament     Opilia amentacea
        Oplt.fasci     Oncopeltus fasciatus
        Opph.acule     Ophiopholis aculeata
        Ormn.sauci     Ormenis saucia
        Orth.mouba     Ornithodoros moubata
        Orya.occid     Oryctanthus occidentalis
        Oryz.sati2     Oryza sativa
        Osmu.cinna     Osmunda cinnamomea
        Osyr.lancl     Osyris lanceolata
        Otob.megni     Otobius megnini
        Otre.eduli     Ostrea edulis
        Oxyt.nova2     Oxytricha nova
        Paec.tenu2     Paecilomyces tenuipes
        Paec.tenui     Paecilomyces tenuipes
        Palm.palma     Palmaria palmata
        Pass.montn     Passer montanus
        Paul.chrom     Paulinella chromatophora
        Pavl.salin     Pavlova salina
        Pchn.sp1       Parauchenipterus sp.
        Pcla.trchm     Phyllocladus trichomonoides
        Pclc.peper     Phacelocarpus peperocarpos
        Pctn.maxim     Pecten maximus
        Pcul.lance     Pedicularis lanceolata
        Pdcl.cernu     Pedicellina cernua
        Pdcp.costa     Podocarpus costalis
        Pdcp.falca     Podocarpus falcatus
        Pdcp.hnkli     Podocarpus henkellii
        Pdcp.nagai     Podocarpus nagai
        Pdur.aquat     Podura aquatica
        Peal.kelog     Pealius kelloggii
        Peon.lactf     Paeonia lactiflora
        Perd.folia     Peridinium foliaceum
        Perk.marin     Perkinsus marinus
        Pers.brbon     Persea borbonia
        Pesi.scabr     Paesia scaberula
        Pezi.badia     Peziza badia
        Phac.anta2     Phaeocystis antarctica
        Phac.anta3     Phaeocystis antarctica
        Phac.anta4     Phaeocystis antarctica
        Phac.anta5     Phaeocystis antarctica
        Phac.antar     Phaeocystis antarctica
        Phac.globs     Phaeocystis globosa
        Phac.pouch     Phaeocystis pouchetii
        Phaf.rhdzy     Phaffia rhodozyma
        Phal.verru     Phialophora verrucosa
        Phan.elega     Phaeoannellomyces elegans
        Phcm.pyrif     Physcomitrium pyriforme
        Phco.exoph     Phaeococcomyces exophialae
        Phla.spumr     Philaenus spumarius
        Phlo.granu     Phascolosoma granulatum
        Phls.borea     Phylloscopus borealis
        Phlx.notab     Phylloxera notabilis
        Phly.pisum     Philyra pisum
        Phre.bala2     Phreatamoeba balamuthi
        Phrn.archi     Phoronis architecta
        Phrn.vancv     Phoronis vancouverensis
        Phru.pyrif     Phthirusa pyrifolia
        Phso.paten     Physcomitrella patens
        Phst.notat     Phaeostigma notata
        Phyd.ruben     Phycodrys rubens
        Pice.mari2     Picea mariana
        Pice.maria     Picea mariana
        Pinu.elltt     Pinus elliotti
        Pinu.luch3     Pinus luchuensis
        Pinu.luchu     Pinus luchuensis
        Pinu.taeda     Pinus taeda
        Pinu.walli     Pinus wallichiana
        Pipe.nigrm     Piper nigrum
        Pist.strat     Pistia stratoides
        Pisu.sati2     Pisum sativum
        Pisu.sativ     Pisum sativum
        Pitt.japon     Pittosporum japonicum
        Plas.flori     Plasmodium floridense
        Plas.mexic     Plasmodium mexicanum
        Plas.ovale     Plasmodium ovale
        Plas.reich     Plasmodium reichenowi
        Plas.viva2     Plasmodium vivax
        Plas.viva3     Plasmodium vivax
        Plas.viva4     Plasmodium vivax
        Plas.viva5     Plasmodium vivax
        Plas.viva6     Plasmodium vivax
        Plcm.angst     Plocamium angustum
        Plcm.cart2     Plocamium cartilagineum
        Plcm.cartl     Plocamium cartilagineum
        Plco.vitta     Platycotis vittata
        Plcs.coria     Placospermum coriaceum
        Plct.nigre     Plectania nigrella
        Plgc.subvr     Pelagococcus subviridis
        Plgm.calce     Pelagomonas calceolata
        Plli.epiph     Pellia epiphylla
        Plmc.pulv2     Plocamiocolax pulvinata
        Plmc.pulvn     Plocamiocolax pulvinata
        Plmt.repen     Plumatella repens
        Plnc.multt     Planocera multitentaculata
        Plpl.mulvs     Polyplastron multivesiculatum
        Plrs.insig     Pleurastrum insigne
        Plrs.terre     Pleurastrum terrestre
        Plrt.ostre     Pleurotus ostreatus
        Plsp.herb2     Pleospora herbarum
        Plsp.herbm     Pleospora herbarum
        Plst.angui     Pleistophora anguillarum
        Plst.sp1       Pleistophora sp.
        Plst.spSd      Pleistophora sp.
        Pltl.obtus     Platylobium obtusangulum
        Pltn.occdn     Platanus occidentalis
        Plya.ferru     Philya ferruginosa
        Plym.19580     Polytoma sp.
        Plym.SAG62     Polytoma sp.
        Plym.anoml     Polytoma anomale
        Plym.diffi     Polytoma difficile
        Plym.ellip     Polytoma ellipticum
        Plym.mirum     Polytoma mirum
        Plym.obtus     Polytoma obtusum
        Plym.ovifm     Polytoma oviforme
        Plym.sp963     Polytoma sp.
        Plym.uvel2     Polytoma uvella
        Plym.uvel3     Polytoma uvella
        Plym.uvel4     Polytoma uvella
        Plym.uvell     Polytoma uvella
        Plyp.parvl     Polyphysa parvula
        Plyp.pncl2     Polyphysa peniculus
        Plyp.pncls     Polyphysa peniculus
        Pmph.betae     Pemphigus betae
        Pncy.cari2     Pneumocystis carinii
        Pnom.minut     Pedinomonas minutissima
        Pnor.germn     Panorpa germanica
        Pnul.argus     Panulirus argus
        Pobl.fulgn     Poblicia fuliginosa
        Podn.spath     Polyodon spathula
        Podp.pelta     Podophyllum peltatum
        Pols.domin     Polistes dominulus
        Polt.commu     Polytrichum commune
        Polt.formo     Polytrichum formosum
        Pors.glaci     Porosira glacialis
        Ppht.mega2     Phytophthora megasperma
        Ppid.crust     Porpidia crustulata
        Pplc.elega     Papiliocellulus elegans
        Pprm.serpn     Peperomia serpens
        Pprm.sp        Peperomia sp.
        Ppsy.venus     Pachypsylla venusta
        Prcm.clark     Procambarus clarkii
        Prcm.leon2     Procambarus leonensis
        Prcz.sp1       Protocruzia sp.
        Prkl.dolus     Prokelisia dolus
        Prkl.margn     Prokelisia marginata
        Prod.teres     Prorodon teres
        Prph.foram     Paraphysomonas foraminifera
        Prph.vesti     Paraphysomonas vestita
        Prpr.acant     Porphyra acanthophora
        Prpr.ampli     Porphyra amplissima
        Prpr.leuco     Porphyra leucosticta
        Prpr.minia     Porphyra miniata
        Prpr.purpr     Porphyra purpurea
        Prpr.spir2     Porphyra spiralis
        Prpr.spira     Porphyra spiralis
        Prpr.umbi2     Porphyra umbilicalis
        Prpr.umbi3     Porphyra umbilicalis
        Prpr.yezoe     Porphyra yezoensis
        Prpu.caud2     Priapulus caudatus
        Prpu.caud3     Priapulus caudatus
        Prpu.cauda     Priapulus caudatus
        Prrc.marla     Prorocentrum mariae-labouriae
        Prso.ameri     Prosopanche americana
        Prsp.plagi     Prosapia plagiata
        Prta.repen     Protea repens
        Prth.wick2     Prototheca wickerhamii
        Prtm.lactu     Protomyces lactucae
        Prtm.macro     Protomyces macrosporus
        Prtm.pachy     Protomyces pachydermus
        Prtn.serra     Parthenope serrata
        Prun.illcf     Prunus ilicifolia
        Prun.persi     Prunus persica
        Prus.major     Parus major
        Prym.pate2     Prymnesium patelliferum
        Prym.patel     Prymnesium patelliferum
        Psco.longi     Pseudococcus longispinus
        Psil.nudu2     Psilotum nudum
        Psil.nudu3     Psilotum nudum
        Psil.nudum     Psilotum nudum
        Psip.botry     Protosiphon botryoides
        Psmm.milia     Psammechinus miliaris
        Psmt.dubiu     Pseudomicrothorax dubius
        Pspa.gotoi     Paraspadella gotoi
        Pspd.elast     Pseudopedinella elastica
        Psru.sp1       Pseudachorutes sp.
        Pssf.marin     Pseudoscourfieldia marina
        Pssp.haeck     Psorospermium haeckelii
        Psto.eilhr     Prostoma eilhardi
        Pstr.keili     Pseudotrichomonas keilini
        Pstt.schie     Psittacanthus schiedianus
        Ptdm.danic     Pteridomonas danica
        Ptig.npdac     Peltigera neopolydactyla
        Ptmd.scroa     Pentatrichomonoides scroa
        Ptmg.sp        Potamogeton sp.
        Ptmo.Brazl     Phytomonas sp.
        Ptmo.Ecuad     Phytomonas sp.
        Ptmo.EhiSe     Phytomonas sp.
        Ptmo.FrGui     Phytomonas sp.
        Ptmo.Mar1      Phytomonas sp.
        Ptmo.Suri2     Phytomonas sp.
        Ptmo.Surin     Phytomonas sp.
        Ptmo.serpe     Phytomonas serpens
        Ptmo.sp11      Phytomonas sp.
        Ptmo.sp_1      Phytomonas sp.
        Ptrd.aquil     Pteridium aquilinum
        Ptri.cockr     Paratrioza cockerelli
        Ptrl.setif     Petriella setifera
        Ptrs.crspm     Petroselinum crispum
        Pugt.quadr     Pugettia quadridens
        Punc.expan     Punctaria expansa
        Puni.grana     Punica granatum
        Pyrp.triti     Pyrenophora tritici-repentis
        Pyru.puber     Pyrularia pubera
        Ralf.fungi     Ralfsia fungiformis
        Ranl.muric     Ranilia muricata
        Ratt.norw3     Rattus norvegicus
        Ratt.norw4     Rattus norvegicus
        Rcci.fluit     Riccia fluitans
        Rchr.marin     Rhizochromulina marina
        Rcor.purpr     Rhodochorton purpureum
        Rdge.pisce     Ridgeia piscesae
        Rdhy.ruful     Rhytidhysteron rufulum
        Rebl.hmsp2     Reboulia hemisphaerica
        Rebl.hmsph     Reboulia hemisphaerica
        Rgas.nebul     Rhaphigaster nebulosa
        Rhab.myrph     Rhabditis myriophila
        Rhbt.axei      Rhabditella axei
        Rhdl.macul     Rhodella maculata
        Rhdm.confv     Rhodomela confervoides
        Rhdt.gluti     Rhodotorula glutinis
        Rhdt.grami     Rhodotorula graminis
        Rhdt.mucil     Rhodotorula mucilaginosa
        Rhdy.lnear     Rhodymenia linearis
        Rhmn.mari2     Rhodomonas mariana
        Rhmn.maria     Rhodomonas mariana
        Rhph.belgi     Rhaphoneis belgicae
        Rhpl.padi      Rhopalosiphum padi
        Rhyt.salic     Rhytisma salicinum
        Rhza.zipel     Rhizanthes zipellii
        Rhzc.spSN2     Rhizoctonia sp.
        Rhzc.zeae      Rhizoctonia zeae
        Rhzp.subca     Rhizopogon subcaerulescens
        Ribe.aureu     Ribes aureum
        Ricc.pingu     Riccardia pinguis
        Rici.comm2     Ricinis communis
        Rmch.ancep     Ramichloridium anceps
        Rnsp.flavi     Renispora flavissima
        Rnun.acris     Ranunculus acris
        Rnun.sardo     Ranunculus sardous
        Rosa_hydri     Rosa hybrida
        Rpcp.pusil     Rhipicephalus pusillus
        Rpcp.sangu     Rhipicephalus sanguineus
        Rphd.longi     Raphidonema longiseta
        Rphy.elega     Rhodophysema elegans
        Rspo.dacry     Rhodosporidium dacryoidum
        Rthm.flrid     Rhodothamniella floridula
        Sabi.swinh     Sabia swinhoei
        Sabl.minor     Sabal minor
        Sacc.cere2     Saccharomyces cerevisiae
        Sacc.cere8     Saccharomyces cerevisiae
        Sacc.exigu     Saccharomyces exiguus
        Sacg.kowal     Saccoglossus kowalevskii
        Sagt.crass     Sagitta crassa
        Sagt.elega     Sagitta elegans
        Salm.trutt     Salmo trutta
        Salv.natan     Salvinia natans
        Sarm.henr2     Saruma henryi
        Sarm.henry     Saruma henryi
        Saur.cernu     Saururus cernuus
        Sbgl.fiord     Siboglinum fiordicum
        Sccb.sp        Scolecobasidium sp.
        Scch.offcn     Saccharum officinarum
        Scco.ludwg     Saccharomycodes ludwigii
        Sccp.capsl     Saccharomycopsis capsularis
        Sccp.fibul     Saccharomycopsis fibuligera
        Scen.commu     Scenedesmus communis
        Scen.cosgr     Scenedesmus costato-granulatus
        Scen.ovalt     Scenedesmus ovalternus
        Scen.prcap     Scenedesmus producto-capitatus
        Schd.chine     Schisandra chinensis
        Schf.dubia     Scherffelia dubia
        Schm.peric     Schismatomma pericleum
        Schn.comos     Sporochnus comosus
        Scho.brchp     Schotia brachypetala
        Schp.schrb     Schoepfia schreberi
        Schs.haem2     Schistosoma haematobium
        Schs.japon     Schistosoma japonicum
        Schs.spind     Schistosoma spindale
        Scht.nicae     Schottera nicaeensis
        Schz.grami     Schizaphis graminum
        Sclp.undul     Sceloporus undulatus
        Sclr.hphil     Sclerotium hydrophilum
        Scol.fumid     Scolops fumida
        Scpn.nemor     Scapania nemorea
        Scts.casta     Scutellospora castanea
        Scts.dipap     Scutellospora dipapillosa
        Scts.hetgm     Scutellospora heterogama
        Scts.pellu     Scutellospora pellucida
        Scys.lome2     Scytosiphon lomentaria
        Scys.lome3     Scytosiphon lomentaria
        Scys.lomen     Scytosiphon lomentaria
        Sebd.flabl     Sebdenia flabellata
        Sfrn.chine     Sinofranchetia chinensis
        Sgen.cunea     Sargentodoxa cuneata
        Sgtt.lncfl     Sagittaria lancifolia
        Sial.spNCS     Sialis sp.
        Sina.alba2     Sinapis alba
        Sipc.tropi     Siphonocladus tropicus
        Sklt.cost2     Skeletonema costatum
        Sklt.costa     Skeletonema costatum
        Sklt.pcos2     Skeletonema pseudocostatum
        Sklt.pcost     Skeletonema pseudocostatum
        Slgn.galle     Selaginella galleottii
        Slgn.sp1       Selaginella sp.
        Slmc.sphae     Salmacis sphaeroides
        Slrt.scle2     Sclerotinia sclerotiorum
        Slrt.scler     Sclerotinia sclerotiorum
        Sltd.chnen     Schlechtendalia chinensis
        Smit.culis     Smittium culisetae
        Sntl.album     Santalum album
        Sola.avicu     Solanum aviculare
        Sola.melon     Solanum melongena
        Sola.petph     Solanum petrophilum
        Sola.tuber     Solanum tuberosum
        Solr.croce     Solorina crocea
        Spat.flavi     Spathularia flavida
        Spcp.donnl     Sphaerocarpos donnelli
        Spen.cingu     Scolopendra cingulata
        Spgn.cuspd     Sphagnum cuspidatum
        Spgu.loph2     Spraguea lophii
        Spgy.grevl     Spirogyra grevilleana
        Sphn.acuta     Siphanta acuta
        Sphr.crnpf     Sphaerococcus coronopifolius
        Sphz.granu     Sphaerozosma granulatum
        Spin.oler2     Spinacia oleracea
        Spin.olera     Spinacia oleracea
        Spis.strun     Spisula subtruncata
        Splc.furci     Sphacelaria furcigera
        Spph.globo     Sphaerophorus globosus
        Sprg.euryc     Sparganium eurycarpum
        Sprm.ligni     Sporomia lignicola
        Spss.festi     Spissistilus festinus
        Spst.ambig     Spirostomum ambiguum
        Sptd.sp        Spathidium sp.
        Sptt.inte2     Septata intestinalis
        Sptt.inte3     Septata intestinalis
        Sptt.intes     Septata intestinalis
        Srch.granl     Sphaerechinus granularis
        Srcn.phmur     Sarcinomyces phaeomuriformis
        Srco.furca     Sarcodiotheca furcata
        Srco.gaud2     Sarcodiotheca gaudichaudii
        Srco.gaudi     Sarcodiotheca gaudichaudii
        Srcr.texan     Sphaerocarpus texanus
        Srcy.ariet     Sarcocystis arieticanis
        Srcy.giga2     Sarcocystis gigantea
        Srcy.gigan     Sarcocystis gigantea
        Srcy.neuro     Sarcocystis neurona
        Srcy.tenel     Sarcocystis tenella
        Srdr.fimic     Sordaria fimicola
        Srgh.biclr     Sorghum bicolor
        Srhz.plysc     Saccorhiza polyschides
        Ssph.prola     Setosphaeria prolata
        Ssph.rostr     Setosphaeria rostrata
        Sstl.aureo     Sphaerostilbella aureonitens
        Sstl.spGJS     Sphaerostilbella sp.
        Stau.M752      Staurastrum sp.
        Stau.M753      Staurastrum sp.
        Stcc.bacil     Stichococcus bacillaris
        Stct.radia     Stictis radiata
        Stic.japon     Stichopus japonicus
        Stlr.media     Stellaria media
        Stnc.major     Stenocypris major
        Stnu.ciner     Sturnus cineraceus
        Stpn.vario     Stomopneustes variolaris
        Stro.intme     Strongylocentrotus intermedius
        Stro.purp3     Strongylocentrotus purpuratus
        Stro.purpu     Strongylocentrotus purpuratus
        Stru.oerst     Struthanthus oerstedii
        Strx.uraln     Strix uralensis
        Sttn.hexph     Stauntonia hexaphylla
        Sttp.ornt2     Streptopelia orientalis
        Sttp.orntl     Streptopelia orientalis
        Sttt.thame     Streptotheca thamesis
        Stye.montr     Styela montereyensis
        Stye.plic2     Styela plicata
        Styl.pust2     Stylonychia pustulata
        Styn.alsid     Stylonema alsidii
        Styr.ameri     Styrax americana
        Sybd.pilo3     Symbiodinium pilosum
        Sybd.sp2       Symbiodinium sp.
        Sybd.spAhe     Symbiodinium sp.
        Sybd.spMku     Symbiodinium sp.
        Sycn.calca     Sycon calcaravis
        Sydm.paphi     Sympodiomycopsis paphiopedili
        Symp.panic     Symplocus paniculata
        Syrg.phinn     Syringoderma phinneyi
        Syta.buchn     Symbiotaphrina buchneri
        Syta.koch2     Symbiotaphrina kochii
        Syta.kochi     Symbiotaphrina kochii
        Syyg.sp        Symphyogyna sp.
        Szsa.japon     Schizosaccharomyces japonicus
        Szsa.pomb3     Schizosaccharomyces pombe
        Szym.dubyi     Schizymenia dubyi
        Taiw.crypt     Taiwania cryptomerioides
        Taon.atomr     Taonia atomaria
        Targ.cyanu     Tarsiger cyanurus
        Tasm.purpr     Tasmannia purpurescens
        Taxu.bacca     Taxus baccata
        Taxu.maire     Taxus mairei
        Tbrt.trnsv     Terebratalia transversa
        Tcys.aeria     Tetracystis aeria
        Teti.japon     Tetilla japonica
        Tetr.aust2     Tetrahymena australis
        Tetr.cana2     Tetrahymena canadensis
        Tetr.capr2     Tetrahymena capricornis
        Tetr.corls     Tetrahymena corlissi
        Tetr.empid     Tetrahymena empidokyrea
        Tetr.hege2     Tetrahymena hegewishii
        Tetr.hype2     Tetrahymena hyperangularis
        Tetr.nann2     Tetrahymena nanneyi
        Tetr.patu2     Tetrahymena patula
        Tetr.pyri2     Tetrahymena pyriformis
        Tetr.ther2     Tetrahymena thermophila
        Tetr.trop2     Tetrahymena tropicalis
        Thes.imped     Thesium impeditum
        Thla.democ     Thalia democratica
        Thlb.sterc     Thelebolus stercoreus
        Thlr.parv2     Theileria parva
        Thlv.terre     Thielavia terrestris
        Thnt.cuc10     Thanatephorus cucumeris
        Thnt.cuc11     Thanatephorus cucumeris
        Thnt.cuc12     Thanatephorus cucumeris
        Thnt.cuc13     Thanatephorus cucumeris
        Thnt.cuc14     Thanatephorus cucumeris
        Thnt.cuc15     Thanatephorus cucumeris
        Thnt.cuc16     Thanatephorus cucumeris
        Thnt.cuc17     Thanatephorus cucumeris
        Thnt.cucu2     Thanatephorus cucumeris
        Thnt.cucu3     Thanatephorus cucumeris
        Thnt.cucu4     Thanatephorus cucumeris
        Thnt.cucu5     Thanatephorus cucumeris
        Thnt.cucu6     Thanatephorus cucumeris
        Thnt.cucu7     Thanatephorus cucumeris
        Thnt.cucu8     Thanatephorus cucumeris
        Thnt.cucu9     Thanatephorus cucumeris
        Thnt.cucum     Thanatephorus cucumeris
        Thrs.heimi     Thoracosphaera heimii
        Thss.eccen     Thalassiosira eccentrica
        Thss.rotul     Thalassiosira rotula
        Tino.caffr     Tinospora caffra
        Tipl.spNCT     Tipula sp.
        Tkka.lepid     Takakia lepidozioides
        Tlrm.bacil     Talaromyces bacillisporus
        Tlyp.portr     Tolypella porteri
        Tmnp.hardw     Temnopleurus hardwickii
        Tmsp.tanne     Tmesipteris tannensis
        Torr.nucif     Torreya nucifera
        Tphr.calif     Taphrina californica
        Tphr.defrm     Taphrina deformans
        Tphr.dfrm2     Taphrina deformans
        Tphr.popul     Taphrina populina
        Tpna.quinq     Tapinanthus quinquangulus
        Trch.scrpt     Trachemys scripta
        Trcm.tena2     Trichomonas tenax
        Trcm.tenax     Trichomonas tenax
        Trcm.vagls     Trichomonas vaginalis
        Trdd.arali     Trochodendron aralioides
        Trdn.acuti     Tripodanthus acutifolius
        Trdu.chrys     Turdus chrysolaus
        Trdu.crdis     Turdus cardis
        Trdu.migrt     Turdus migratorius
        Trdu.naumn     Turdus naumanni
        Trdu.obscr     Turdus obscurus
        Tres.capax     Tresus capax
        Tres.nutta     Tresus nuttali
        Trgd.trgld     Troglodytes troglodytes
        Trhy.ambio     Toxorhynchites ambionensis
        Trio.eugen     Trioza eugeniae
        Trit.aest2     Triticum aestivum
        Trit.aesti     Triticum aestivum
        Trls.globo     Torulaspora globosa
        Trls.preto     Torulaspora pretoriensis
        Trmt.trypn     Trichomitus trypanoides
        Trpa.majus     Tropaeolum majus
        Trph.mente     Trichophyton mentagrophytes
        Trph.mentg     Trichophyton mentagrophytes
        Trph.rubr2     Trichophyton rubrum
        Trph.schon     Trichophyton schoenleinii
        Trph.tonsu     Trichophyton tonsurans
        Trph.viola     Trichophyton violaceum
        Trpn.gratl     Tripneustes gratilla
        Trps.dctyl     Tripsacum dactyloides
        Trpt.lampa     Trypetesa lampas
        Trpx.sp1       Trichoplax sp.
        Trtr.foet2     Tritrichomonas foetus
        Tryp.avium     Trypanosoma avium
        Tryp.boiss     Trypanosoma boissoni
        Tryp.cong3     Trypanosoma congolense
        Tryp.cong5     Trypanosoma congolense
        Tryp.cong7     Trypanosoma congolense
        Tryp.congl     Trypanosoma congolense
        Tryp.rotat     Trypanosoma rotatorium
        Tryp.simia     Trypanosoma simiae
        Tryp.trigl     Trypanosoma triglae
        Tryp.vivax     Trypanosoma vivax
        Ttme.nudfl     Tetrameles nudiflora
        Ttrp.plluc     Tetraphis pellucida
        Ttrs.convl     Tetraselmis convolutae
        Tubf.sp        Tubifex sp.
        Tubr.melan     Tuber melanosporum
        Tubr.rapae     Tuber rapaedorum
        Tupe.antar     Tupeia antarctica
        Txpl.gon10     Toxoplasma gondii
        Txpl.gon11     Toxoplasma gondii
        Txpl.gon12     Toxoplasma gondii
        Txpl.gon13     Toxoplasma gondii
        Txpl.gon14     Toxoplasma gondii
        Txpl.gond4     Toxoplasma gondii
        Txpl.gond5     Toxoplasma gondii
        Txpl.gond6     Toxoplasma gondii
        Txpl.gond7     Toxoplasma gondii
        Txpl.gond8     Toxoplasma gondii
        Txpl.gond9     Toxoplasma gondii
        Uden.mglsp     Udeniomyces megalosporus
        Uden.piric     Udeniomyces piricpla
        Uden.punic     Udeniomyces puniceus
        Ulph.oeres     Ulophysema oeresundense
        Uncp.rees2     Uncinocarpus reesii
        Uncp.reesi     Uncinocarpus reesii
        Urnl.hiema     Urnula hiemalis
        Vair.lyma2     Vairimorpha lymantriae
        Vair.lyma3     Vairimorpha lymantriae
        Vair.neca2     Vairimorpha necatrix
        Vair.neca3     Vairimorpha necatrix
        Vair.sp2       Vairimorpha sp.
        Vair.spNIS     Vairimorpha sp.
        Valn.utric     Valonia utricularis
        Vavr.onco2     Vavraia oncoperae
        Vavr.oncop     Vavraia oncoperae
        Vcos.ramul     Varicosporina ramulosa
        Vdbs.daval     Vandenboschia davallioides
        Vert.dahli     Verticillium dahliae
        Vici.faba      Vicia faba
        Vign.radia     Vigna radiata
        Visc.album     Viscum album
        Visc.artic     Viscum articulatum
        Vttf.corne     Vittaforma corneae
        Wist.sinen     Wisteria sinensis
        Wltm.lipof     Waltomyces lipofer
        Wlwt.mirab     Welwitschia mirabilis
        Wstd.dispr     Westerdykella dispersa
        Xeno.borea     Xenopus borealis
        Xeno.laev3     Xenopus laevis
        Xeno.laev4     Xenopus laevis
        Xeno.laev5     Xenopus laevis
        Xeno.laev6     Xenopus laevis
        Ximn.ameri     Ximenia americana
        Xnth.smplc     Xanthorhiza simplicissima
        Xylr.carpo     Xylaria carpophila
        Xylr.curta     Xylaria curta
        Xylr.hyxyl     Xylaria hypoxylon
        Zami.flori     Zamia floridana
        Zami.otton     Zamia ottonis
        Zea_mays2      Zea mays
        Zoph.culis     Zoophthora culisetae
        Zost.japon     Zosterops japonica
        Zthr.dauma     Zoothera dauma
        Zygm.circm     Zygnemopsis circumcarinata
        Zygs.melli     Zygosaccharomyces mellis
        Zygs.micro     Zygosaccharomyces microellipsoides
        Zygs.mraki     Zygosaccharomyces mrakii
        Zygs.roux2     Zygosaccharomyces rouxii
        env.A61upm     uncultured eukaryotic organism
        str.rosett     rosette agent of chinook salmon
        str.s1         Aespoe laboratory group 1 organism
        sym.Apstco     basidiomycete symbiont of Apterostigma collare
        sym.Attace     basidiomycete symbiont of Atta cephalotes
        sym.Cmyrri     basidiomycete symbiont of Cyphomyrmex rimosa
        sym.Hmltst     ascomycete symbiont of Hamiltonaphis styraci
        sym.Lsdrse     yeast-like symbiont of Lasioderma serricorne
        sym.Rtclf2     symbiont of Reticulitermes flavipes hindgut
        sym.Rtclf3     Hindgut symbiont 1 of Reticulitermes flavipes
        sym.Smyrbo     basidiomycete symbiont of Sericomyrmex bondari
        sym.Stgbpa     yeast-like symbiont of Stegobium paniceum
        sym.Tmyrbu     basidiomycete symbiont of Trachymyrmex bugnioni

Changes in short-ID and/or full names are listed below (RDP short-ID:full name):
 
              RDP Release 6.0                            RDP Release 7.0
  --------------------------------------   -------------------------------------
  Clra.rptn3:Chlorarachnion reptans        Clra.rptn3:Chlorarachnion reptans -- nucleomorph
  Clra.rptn4:Chlorarachnion reptans        Clra.rptn4:Chlorarachnion reptans -- nucleomorph
  Clra.spF31:Chlorarachnion sp. 2          Clra.spF31:Chlorarachnion sp.
  Clra.spF43:Chlorarachnion sp. 1          Clra.spF43:Chlorarachnion sp. -- nucleomorph
  Clra.spF57:Chlorarachnion sp. 2          Clra.spF57:Chlorarachnion sp. -- nucleomorph
  Clra.spF58:Chlorarachnion sp. 1          Clra.spF58:Chlorarachnion sp.
  Dbry.hans1:Debaryomyces hansenii         Dbry.hans3:Debaryomyces hansenii
  Echn.cooke:Echinorhinus cookei           Echr.cooke:Echinorhinus cookei
  Ecyz.bienu:Enterocytozoon bienusi        Ecyz.bienu:Enterocytozoon bieneusi
  Encz.bien2:Encephalitozoon bieneusi      Ecyz.bien2:Enterocytozoon bieneusi
  Eury.calif:Eurypelma californica         Apho.sp1:Aphonopelma sp.
  Loxo.utric:Loxophyllum utriculare        Loxo.utric:Loxophyllum utriculariae
  Oxyt.nova:Oxytricha nova                 Oxyt.nova1:Oxytricha nova
  Pclm.notat:Penniclium notatum            Peni.notat:Penicillium notatum
  Pich.mmbrn:Pichia membranaefaciens       Pich.mmbrn:Pichia membranifaciens
  Pyrn.sali2:Pyrenomonas salina            Pyrn.sali2:Pyrenomonas salina -- nucleomorph
  Sclt.costa:Sceletonema costatum          Sklt.cost3:Skeletonema costatum
  Scyp.lingu:Scypha ciliata                Scyp.cilia:Scypha ciliata
  Sptt.intst:Septata intestinalis          Sptt.inte4:Septata intestinalis
  Sptx.schen:Ophiostoma schenckii          Ophs.schen:Ophiostoma schenckii
  Sybd.sp:Symbiodinium sp.                 Sybd.sp_8:Symbiodinium sp.
  Tetr.malla:Tetrahymena malaccensis       Tetr.malac:Tetrahymena malaccensis
  sym.Hydr.E:Chlorella sp.                 Clrl.spEsh:Chlorella sp.
  sym.Hydr.H:Chlorella sp.                 Clrl.spHvT:Chlorella sp.
  sym.Hydr.J:Chlorella sp.                 Clrl.spJsh:Chlorella sp.

Changes in nucleotide sequence:
         Organism                                Now represented by RDP name
  ----------------------------------             ----------------------------
  Anks.stipu:Ankistrodesmus stipitatus           Anks.stipu
  Argl.nobls:Argulus nobilis                     Argl.nobls
  Babs.bige2:Babesia bigemina                    Babs.bige2
  Babs.bige3:Babesia bigemina                    Babs.bige3
  Babs.bigem:Babesia bigemina                    Babs.bigem
  Buck.disti:Buckleya distichophylla             Buck.disti
  Bufo_valli:Bufo valliceps                      Bufo_valli
  Char.scctm:Characium saccatum                  Char.scctm
  Clrl.ellip:Chlorella ellipsoidea               Clrl.ellip
  Cosc.radia:Coscinodiscus radiatus              Cosc.radia
  Dbry.hansn:Debaryomyces hansenii -- deleted    Dbry.hans3
  Disc.colli:Discophrya collini                  Disc.colli
  Dndr.domin:Dendrophthora domingensis           Dndr.domin
  Dunl.parva:Dunaliella parva                    Dunl.parva
  Dunl.salin:Dunaliella salina                   Dunl.salin
  Ecyz.bienu:Enterocytozoon bieneusi             Ecyz.bienu
  Euon.alatu:Euonymus alatus                     Euon.alatu
  Gall.gallu:Gallus gallus                       Gall.gallu
  Giar.lambl:Giardia lamblia                     Giar.lambl
  Glch.sp:Gyliauchen sp.                         Glch.sp
  Glom.intra:Glomus intraradices                 Glom.intra
  Gntm.leybo:Gnetum leyboldii                    Gntm.leybo
  Hdra.helix:Hedera helix                        Hdra.helix
  Hdrc.sibth:Hydrocotyle sibthorpioides          Hdrc.sibth
  Hldn.rubra:Hildenbrandia rubra                 Hldn.rubra
  Homl.vermi:Homalozoon vermiculare              Homl.vermi
  Htpl.capsu:Histoplasma capsulatum -- deleted   Exact duplicate of Htpl.caps2
  Htrd.pltyr:Heterodon platyrhinos               Htrd.pltyr
  Hxmt.inflt:Hexamita inflata                    Hxmt.inflt
  Hyla_ciner:Hyla cinerea                        Hyla_ciner
  Loxo.utric:Loxophyllum utriculariae            Loxo.utric
  Nspr.canin:Neospora caninum                    Nspr.canin
  Phrd.serot:Phoradendron serotinum              Phrd.serot
  Plas.vivax:Plasmodium vivax                    Plas.vivax
  Pncy.carin:Pneumocystis carinii                Pncy.carin
  Porc.crotl:Porocephalus crotali                Porc.crotl
  Pyrn.salin:Pyrenomonas salina                  Pyrn.salin
  Schp.arena:Schoepfia arenaria                  Schp.arena
  Schs.mansn:Schistosoma mansoni                 Schs.mansn
  Sybd.meand:Symbiodinium meandrinae             Sybd.meand
  Thal.nitzs:Thalassionema nitzschioides         Thal.nitzs
  Trbx.impre:Trebouxia impressa                  Trbx.impre
  Trbx.magna:Trebouxia magna                     Trbx.magna
  Usti.mayds:Ustilago maydis                     Usti.mayds
  Vair.necat:Vairimorpha necatrix                Vair.necat

Changes in GenBank/EMBL associated accession numbers:
         Organism                                 Organism 
  ----------------------------------        ----------------------------
  Alli.msspp:M59383                         Alli.msspp:M59383 M36342
  Clmy.reinh:M32703                         Clmy.reinh:M32703 J02949
  Emil.huxle:L04957                         Emil.huxle:M87327 L04957
  Grac.leman:X54263 M54986                  Grac.leman:M54986
  Hyla_ciner:M59393 M36345                  Hyla_ciner:M59393 M36352
  Mllm.stria:M87333 M87335                  Mllm.stria:M87333 M98335
  Nspr.canin:U03069                         Nspr.canin:L24380

*******************
**  SSU_Mito.gb  **
*******************
The total number of sequences included in the SSU_Mito.gb (small
subunit mitochondrial organisms - GenBank format) file increases from
1072 to 1503. The number of mitochondrial sequences increases from
1066 to 1497. (The number of eubacterial sequences (Ag.tumefac, E.coli,
Ehr.ristic, Rhb.legum6, Ric.bellii, and Ric.prowaz) remains at 6.) No
mask sequences were used in the generation of the phylogenetic tree,
and thus the mask sequences have been removed from the alignment.
(3 sequences were deleted; 434 sequences were added.)
(RDP shortids and organism names of 1053 sequences remain the
same as in Release 6.0, 16 ids/names have changes.)

The characters '~' and '-' represent alignment gap characters.  The
character '.' represents missing data. The character 'N' represents
the presence of a nucleotide of undetermined composition.

See the SSU_rRNA/SSU_Mito.alpha file for more information about the
following new organisms:

        RDP short-ID          Organism (genus species)
        ------------   -----------------------------------------
        Aam.fermen     Acidaminococcus fermentans
        Abrm.sp_M      Abramites sp. -- mitochondrion
        Achr.sp_M      Aphyocharax sp. -- mitochondrion
        Acrh.sp_M      Acestrorhynchus sp. -- mitochondrion
        Acyb.aeg_M     Agrocybe aegerita -- mitochondrion
        Afrx.for_M     Afrixalus fornasini -- mitochondrion
        Ales.sp_M      Alestes sp. -- mitochondrion
        Alrp.me4_M     Ailuropoda melanoleuca -- mitochondrion
        Alrs.fu4_M     Ailurus fulgens -- mitochondrion
        Alth.sp_M      Allothereura sp. -- mitochondrion
        Amby.ti2_M     Ambystoma tigrinum -- mitochondrion
        Amph.chu_M     Amblypharyngodon chulabhornae -- mitochondrion
        Anas_pl5_M     Anas platyrhynchos -- mitochondrion
        Anol.car_M     Anolis carolinensis -- mitochondrion
        Anol.ort_M     Anolis ortoni -- mitochondrion
        Appt.fam_M     Apalopteron familiare -- mitochondrion
        Arbc.li3_M     Arbacia lixula -- mitochondrion
        Arcp.fo4_M     Arctocephalus forsteri -- mitochondrion
        Arcp.gaz_M     Arctocephalus gazella -- mitochondrion
        Arei.aff_M     Apareidodon affinis -- mitochondrion
        Armn.tes_M     Archimandrita tessellata -- mitochondrion
        Arnc.mar_M     Arenicola marina -- mitochondrion
        Aspe.fl4_M     Aspergillus flavus -- mitochondrion
        Aspe.n10_M     Aspergillus niger -- mitochondrion
        Aspe.res_M     Aspergillus restrictus -- mitochondrion
        Aspe.te2_M     Aspergillus terreus -- mitochondrion
        Aspe.ust_M     Aspergillus ustus -- mitochondrion
        Aspe.ver_M     Aspergillus versicolor -- mitochondrion
        Aspe.wnt_M     Aspergillus wentii -- mitochondrion
        Asty.mex_M     Astyanax mexicanus -- mitochondrion
        Athc.pal_M     Acanthochelys pallidopectoris -- mitochondrion
        Bisn.bis_M     Bison bison -- mitochondrion
        Blbr.atr_M     Blaberus atropos -- mitochondrion
        Blbr.cra_M     Blaberus craniifer -- mitochondrion
        Blbr.dis_M     Blaberus discoidalis -- mitochondrion
        Blbr.gig_M     Blaberus giganteus -- mitochondrion
        Blgr.mac_M     Boulengerella maculata -- mitochondrion
        Bltl.vag_M     Blattella vaga -- mitochondrion
        Bltt.ori_M     Blatta orientalis -- mitochondrion
        Bos_grun_M     Bos grunniens -- mitochondrion
        Brgr.rob_M     Buergeria robusta -- mitochondrion
        Brmy.11_M      Brienomyrus sp. -- mitochondrion
        Brmy.12_M      Brienomyrus sp. -- mitochondrion
        Brmy.bat_M     Brienomyrus batesii -- mitochondrion
        Brmy.bra_M     Brienomyrus brachyistius -- mitochondrion
        Brmy.nig_M     Brienomyrus niger -- mitochondrion
        Brmy.sp2_M     Brienomyrus sp. -- mitochondrion
        Brmy.sp3_M     Brienomyrus sp. -- mitochondrion
        Brmy.sp4_M     Brienomyrus sp. -- mitochondrion
        Brmy.sp5_M     Brienomyrus sp. -- mitochondrion
        Bryc.sp_M      Brycon sp. -- mitochondrion
        Bssr.gab_M     Bassaricyon gabbii -- mitochondrion
        Bubl.arn_M     Bubalus arnee -- mitochondrion
        Byrs.fum_M     Byrsotria fumigata -- mitochondrion
        Cael.fu2_M     Caenolestes fuliginosus -- mitochondrion
        Cans.fa3_M     Canis familiaris -- mitochondrion
        Cart.ins_M     Carettochelys insculpta -- mitochondrion
        Cgie.sp_M      Carnegiella sp. -- mitochondrion
        Chac.sp_M      Characidium sp. -- mitochondrion
        Chde.min_M     Chordeiles minor -- mitochondrion
        Chdu.sp_M      Chilodus sp. -- mitochondrion
        Chld.lon_M     Chelodina longicollis -- mitochondrion
        Chld.obl_M     Chelodina oblonga -- mitochondrion
        Chld.rug_M     Chelodina rugosa -- mitochondrion
        Chlo.lab_M     Chelon labrosus -- mitochondrion
        Chlr.mad_M     Chalarodon madagascariensis -- mitochondrion
        Chlu.fim_M     Chelus fimbriata -- mitochondrion
        Chmn.xer_M     Chiromantis xerampelina -- mitochondrion
        Chph.vi2_M     Chaetophractus villosus -- mitochondrion
        Chrd.sp_M      Cheirodon sp. -- mitochondrion
        Chsa.chr_M     Chaetosartorya chrysella -- mitochondrion
        Cirn.con_M     Citharinus congicus -- mitochondrion
        Clra.sp_M      Chlorarachnion sp. -- mitochondrion
        Cltr.mar_M     Cleptornis marchei -- mitochondrion
        Cltt.pra_M     Colostethus pratti -- mitochondrion
        Corv.alb_M     Corvus albus -- mitochondrion
        Cpom.rii_M     Corynopoma riisei -- mitochondrion
        Cpot.sp_M      Cynopotamus sp. -- mitochondrion
        Cprx.sp_M      Cyphocharax sp. -- mitochondrion
        Cpsr.tex_M     Cophosaurus texanus -- mitochondrion
        Cptt.for_M     Coptotermes formosanus -- mitochondrion
        Crcr.p10_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p11_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p12_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p13_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p14_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p15_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p16_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p17_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.p18_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu2_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu3_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu4_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu5_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu6_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu7_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu8_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pu9_M     Cryptocercus punctulatus -- mitochondrion
        Crcr.pun_M     Cryptocercus punctulatus -- mitochondrion
        Crdy.acu_M     Crocodylus acutus -- mitochondrion
        Crel.und_M     Crypturellus undulatus -- mitochondrion
        Crph.col_M     Crotaphytus collaris -- mitochondrion
        Csau.dra_M     Callisaurus draconoides -- mitochondrion
        Ctho.acc_M     Cyclothone acclinidens -- mitochondrion
        Ctho.alb_M     Cyclothone alba -- mitochondrion
        Ctho.atr_M     Cyclothone atraria -- mitochondrion
        Ctho.bra_M     Cyclothone braueri -- mitochondrion
        Ctho.kob_M     Cyclothone kobayashii -- mitochondrion
        Ctho.liv_M     Cyclothone livida -- mitochondrion
        Ctho.mic_M     Cyclothone microdon -- mitochondrion
        Ctho.obs_M     Cyclothone obscura -- mitochondrion
        Ctho.pal_M     Cyclothone pallida -- mitochondrion
        Ctho.ppa_M     Cyclothone parapallida -- mitochondrion
        Ctho.psp_M     Cyclothone pseudopallida -- mitochondrion
        Ctho.pyg_M     Cyclothone pygmaea -- mitochondrion
        Ctho.sig_M     Cyclothone signata -- mitochondrion
        Cthp.pa1_M     Chorthippus parallelus -- mitochondrion
        Cthp.pa2_M     Chorthippus parallelus -- mitochondrion
        Ctlp.lon_M     Ctenolepisma longicaudata -- mitochondrion
        Ctlu.sp_M      Ctenolucius sp. -- mitochondrion
        Cygn.buc_M     Cygnus buccinator -- mitochondrion
        Cygn.me2_M     Cygnus melancoryphus -- mitochondrion
        Daph.AMA_M     Daphnia sp. -- mitochondrion
        Daph.DK8_M     Daphnia sp. -- mitochondrion
        Daph.DWA_M     Daphnia sp. -- mitochondrion
        Daph.Men_M     Daphnia pulicaria -- mitochondrion
        Daph.cuc_M     Daphnia cucullata -- mitochondrion
        Daph.cur_M     Daphnia curvirostris -- mitochondrion
        Daph.de1_M     Daphnia dentifera -- mitochondrion
        Daph.de2_M     Daphnia dentifera -- mitochondrion
        Daph.du1_M     Daphnia dubia -- mitochondrion
        Daph.du2_M     Daphnia dubia -- mitochondrion
        Daph.ga2_M     Daphnia galeata -- mitochondrion
        Daph.ga3_M     Daphnia galeata -- mitochondrion
        Daph.ga4_M     Daphnia galeata -- mitochondrion
        Daph.ga5_M     Daphnia galeata -- mitochondrion
        Daph.ga6_M     Daphnia galeata -- mitochondrion
        Daph.ga7_M     Daphnia galeata -- mitochondrion
        Daph.gal_M     Daphnia galeata -- mitochondrion
        Daph.hy1_M     Daphnia hyalina -- mitochondrion
        Daph.hy2_M     Daphnia hyalina -- mitochondrion
        Daph.lae_M     Daphnia laevis -- mitochondrion
        Daph.lre_M     Daphnia longiremis -- mitochondrion
        Daph.lsp_M     Daphnia longispina -- mitochondrion
        Daph.lum_M     Daphnia lumholtzi -- mitochondrion
        Daph.ma2_M     Daphnia magna -- mitochondrion
        Daph.mag_M     Daphnia magna -- mitochondrion
        Daph.mid_M     Daphnia middendorffiana -- mitochondrion
        Daph.obt_M     Daphnia obtusa -- mitochondrion
        Daph.pu2_M     Daphnia pulex -- mitochondrion
        Daph.ro1_M     Daphnia rosea -- mitochondrion
        Daph.ro2_M     Daphnia rosea -- mitochondrion
        Daph.sim_M     Daphnia similis -- mitochondrion
        Daph.tho_M     Daphnia thorata -- mitochondrion
        Daph.um1_M     Daphnia umbra -- mitochondrion
        Daph.um2_M     Daphnia umbra -- mitochondrion
        Devr.dev_M     Devario devario -- mitochondrion
        Devr.mal_M     Devario malabaricus -- mitochondrion
        Devr.pra_M     Devario pathirana -- mitochondrion
        Dnio.ker_M     Danio kerri -- mitochondrion
        Dnio.pul_M     Danio pulcher -- mitochondrion
        Dplp.pun_M     Diploptera punctata -- mitochondrion
        Drmc.gli_M     Dromiciops gliroides -- mitochondrion
        Dros.p22_M     Drosophila pseudoobscura -- mitochondrion
        Dros.p23_M     Drosophila pseudoobscura -- mitochondrion
        Dsch.sp_M      Distichodus sp. -- mitochondrion
        Dugn.du2_M     Dugong dugon -- mitochondrion
        Eblb.pos_M     Eublaberus posticus -- mitochondrion
        Elep.max_M     Elephas maximus -- mitochondrion
        Else.den_M     Elseya dentata -- mitochondrion
        Else.lat_M     Elseya latisternum -- mitochondrion
        Elus.mac_M     Elusor macrurus -- mitochondrion
        Emdr.mqr_M     Emydura macquarrii -- mitochondrion
        Emrc.het_M     Emericella heterothallica -- mitochondrion
        Enhr.lu2_M     Enhydra lutris -- mitochondrion
        Eplm.azt_M     Epilampra azteca -- mitochondrion
        Epts.fu2_M     Eptesicus fuscus -- mitochondrion
        Erch.mad_M     Erymnochelys madagascariensis -- mitochondrion
        Errh.sp_M      Euthyrrhapha sp. -- mitochondrion
        Eurt.ams_M     Eurotium amstelodami -- mitochondrion
        Feli.ca7_M     Felis catus -- mitochondrion
        Fnnl.fla_M     Fennellia flavipes -- mitochondrion
        Fuli.atr_M     Fulica atra -- mitochondrion
        Galt.sim_M     Gallotia simonyi -- mitochondrion
        Gchr.sp_M      Gephyrocharax sp. -- mitochondrion
        Girf.cam_M     Giraffa camelopardalis -- mitochondrion
        Gnne.pet_M     Gnathonemus petersii -- mitochondrion
        Gons.atl_M     Gonostoma atlanticum -- mitochondrion
        Gons.gra_M     Gonostoma gracile -- mitochondrion
        Gpel.sp_M      Gasteropelecus sp. -- mitochondrion
        Grph.por_M     Gromphadorhina portentosa -- mitochondrion
        Gthe.rio_M     Gastrotheca riobambae -- mitochondrion
        Gyar.nil_M     Gymnarchus niloticus -- mitochondrion
        Hbrk.ma1_M     Holbrookia maculata -- mitochondrion
        Hbrk.ma2_M     Holbrookia maculata -- mitochondrion
        Hcyo.sp_M      Hydrocyon sp. -- mitochondrion
        Hdus.sp_M      Hemiodus sp. -- mitochondrion
        Hgam.cho_M     Heterogamisca chopardi -- mitochondrion
        Homo_sa9_M     Homo sapiens -- mitochondrion
        Homr.ame_M     Homarus americanus -- mitochondrion
        Hopl.mal_M     Hoplias malabaricus -- mitochondrion
        Hpag.ant_M     Harpagifer antarcticus -- mitochondrion
        Hrix.boe_M     Heterixalus boettgeri -- mitochondrion
        Hrix.tri_M     Heterixalus tricolor -- mitochondrion
        Hrps.aur_M     Herpestes auropunctatus -- mitochondrion
        Hset.odo_M     Hepsetus odoe -- mitochondrion
        Hych.hy3_M     Hydrochaeris hydrochaeris -- mitochondrion
        Hyro.ar2_M     Hyperolius argus -- mitochondrion
        Hyro.pun_M     Hyperolius puncticulatus -- mitochondrion
        Hyro.vir_M     Hyperolius viridiflavus -- mitochondrion
        Isch.aus_M     Ischnochiton australis -- mitochondrion
        Isod.ma2_M     Isoodon macrourus -- mitochondrion
        Ixod.pac_M     Ixodes pacificus -- mitochondrion
        Ixod.ric_M     Ixodes ricinus -- mitochondrion
        Ixod.s10_M     Ixodes scapularis -- mitochondrion
        Ixod.s11_M     Ixodes scapularis -- mitochondrion
        Ixod.s12_M     Ixodes scapularis -- mitochondrion
        Ixod.s13_M     Ixodes scapularis -- mitochondrion
        Ixod.s14_M     Ixodes scapularis -- mitochondrion
        Ixod.s15_M     Ixodes scapularis -- mitochondrion
        Ixod.s16_M     Ixodes scapularis -- mitochondrion
        Ixod.s17_M     Ixodes scapularis -- mitochondrion
        Ixod.s18_M     Ixodes scapularis -- mitochondrion
        Ixod.s19_M     Ixodes scapularis -- mitochondrion
        Ixod.s20_M     Ixodes scapularis -- mitochondrion
        Ixod.s21_M     Ixodes scapularis -- mitochondrion
        Ixod.s22_M     Ixodes scapularis -- mitochondrion
        Ixod.s23_M     Ixodes scapularis -- mitochondrion
        Ixod.s24_M     Ixodes scapularis -- mitochondrion
        Ixod.sc2_M     Ixodes scapularis -- mitochondrion
        Ixod.sc3_M     Ixodes scapularis -- mitochondrion
        Ixod.sc4_M     Ixodes scapularis -- mitochondrion
        Ixod.sc5_M     Ixodes scapularis -- mitochondrion
        Ixod.sc6_M     Ixodes scapularis -- mitochondrion
        Ixod.sc7_M     Ixodes scapularis -- mitochondrion
        Ixod.sc8_M     Ixodes scapularis -- mitochondrion
        Ixod.sc9_M     Ixodes scapularis -- mitochondrion
        Ixod.sca_M     Ixodes scapularis -- mitochondrion
        Kass.mac_M     Kassina maculata -- mitochondrion
        Kass.sen_M     Kassina senegalensis -- mitochondrion
        Kner.sp_M      Kneria sp. -- mitochondrion
        Lcph.bar_M     Leiocephalus barahonensis -- mitochondrion
        Lcph.sp_M      Leiocephalus sp. -- mitochondrion
        Ldyt.lin_M     Lithodytes lineatus -- mitochondrion
        Liol.sca_M     Liolaemus scapularis -- mitochondrion
        List.fus_M     Lichenostomus fuscus -- mitochondrion
        Litr.cyc_M     Litoria cyclorhynchus -- mitochondrion
        Litt.ale_M     Littorina aleutica -- mitochondrion
        Litt.arc_M     Littorina arcana -- mitochondrion
        Litt.bre_M     Littorina brevicula -- mitochondrion
        Litt.hor_M     Littorina horikawai -- mitochondrion
        Litt.kas_M     Littorina kasatka -- mitochondrion
        Litt.kee_M     Littorina keenea -- mitochondrion
        Litt.lit_M     Littorina littorea -- mitochondrion
        Litt.mar_M     Littorina mariae -- mitochondrion
        Litt.nig_M     Littorina nigrolineata -- mitochondrion
        Litt.obt_M     Littorina obtusata -- mitochondrion
        Litt.ple_M     Littorina plena -- mitochondrion
        Litt.sax_M     Littorina saxatilis -- mitochondrion
        Litt.scu_M     Littorina scutulata -- mitochondrion
        Litt.sit_M     Littorina sitkana -- mitochondrion
        Litt.squ_M     Littorina squalida -- mitochondrion
        Litt.str_M     Littorina striata -- mitochondrion
        Litt.sub_M     Littorina subrotundata -- mitochondrion
        Liza_aur_M     Liza aurata -- mitochondrion
        Liza_ram_M     Liza ramada -- mitochondrion
        Liza_sal_M     Liza saliens -- mitochondrion
        Lndi.doh_M     Latindia dohrniana -- mitochondrion
        Loxd.af2_M     Loxodonta africana -- mitochondrion
        Lpny.we2_M     Leptonychotes weddelli -- mitochondrion
        Lrin.obt_M     Leporinus obtusidens -- mitochondrion
        Lthp.les_M     Lithophaga lessepsiana -- mitochondrion
        Lthp.pup_M     Lithophaga pupurea -- mitochondrion
        Lthp.sim_M     Lithophaga simplex -- mitochondrion
        Ltpl.arg_M     Leptopelis argenteus -- mitochondrion
        Ltpl.con_M     Leptopelis concolor -- mitochondrion
        Ltpl.ver_M     Leptopelis vermiculatus -- mitochondrion
        Mast.dar_M     Mastotermes darwiniensis -- mitochondrion
        Mels.mel_M     Meles meles -- mitochondrion
        Mgrt.obt_M     Margrethia obtusirostrae -- mitochondrion
        Mlde.bel_M     Melidectes belfordi -- mitochondrion
        Mlzs.sor_M     Melanozosteria soror -- mitochondrion
        Mnch.sc2_M     Monachus schauinslandi -- mitochondrion
        Mnis.sp_M      Manis sp. -- mitochondrion
        Mnts.rel_M     Mantis religiosa -- mitochondrion
        Morn.sax_M     Morone saxatilis -- mitochondrion
        Mpht.me2_M     Mephitis mephitis -- mitochondrion
        Mrng.leo_M     Mirounga leonina -- mitochondrion
        Msen.sen_M     Marcusenius senegalensis -- mitochondrion
        Mugl.cep_M     Mugil cephalus -- mitochondrion
        Mugl.cur_M     Mugil curema -- mitochondrion
        Must.niv_M     Mustela nivalis -- mitochondrion
        Must.pu2_M     Mustela putorius -- mitochondrion
        Must.vi3_M     Mustela vison -- mitochondrion
        Nhbl.fra_M     Nahublattella fraterna -- mitochondrion
        Nhbl.nah_M     Nahublattella nahu -- mitochondrion
        Nlit.rad_M     Nodilittorina radiata -- mitochondrion
        Nlit.tro_M     Nodilittorina trochoides -- mitochondrion
        Nnst.sp_M      Nannostomus sp. -- mitochondrion
        Npht.cin_M     Nauphoeta cinerea -- mitochondrion
        Nryc.tp2_M     Notoryctes typhlops -- mitochondrion
        Nsar.fis_M     Neosartorya fischeri -- mitochondrion
        Ntpt.chi_M     Notopterus chitala -- mitochondrion
        Nyct.azt_M     Nyctibora azteca -- mitochondrion
        Nyct.lut_M     Nyctibora lutzi -- mitochondrion
        Nyme.alb_M     Nyctimene albiventer -- mitochondrion
        Odal.lab_M     Oedalechilus labeo -- mitochondrion
        Oplr.cuv_M     Oplurus cuvieri -- mitochondrion
        Oplr.cyc_M     Oplurus cyclurus -- mitochondrion
        Oplr.qu2_M     Oplurus quadrimaculatus -- mitochondrion
        Oplr.sax_M     Oplurus saxicola -- mitochondrion
        Osar.sp_M      Oligosarcus sp. -- mitochondrion
        Pant.le4_M     Panthera leo -- mitochondrion
        Pant.ti2_M     Panthera tigris -- mitochondrion
        Pbob.tri_M     Phobobates trivittatus -- mitochondrion
        Pchr.inn_M     Paracheirodon innesi -- mitochondrion
        Pcne.exp_M     Podocnemis expansa -- mitochondrion
        Pcph.dur_M     Peltocephalus durmerilianus -- mitochondrion
        Pcti.ver_M     Phylctimantis verrucosus -- mitochondrion
        Pctn.max_M     Pecten maximus -- mitochondrion
        Pelu.sin_M     Pelusios sinuatus -- mitochondrion
        Petc.bov_M     Petrocephalus bovei -- mitochondrion
        Phcl.ci2_M     Phascolarctos cinereus -- mitochondrion
        Phgr.int_M     Phenacogrammus interruptus -- mitochondrion
        Phmd.pal_M     Phyllomedusa palliata -- mitochondrion
        Phti.pho_M     Phortioeca phoraspoides -- mitochondrion
        Phtl.pal_M     Phoetalia pallida -- mitochondrion
        Pisu.sat_M     Pisum sativum -- mitochondrion
        Pkne.sp_M      Parakneria sp. -- mitochondrion
        Pmed.sub_M     Pelomedusa subrufa -- mitochondrion
        Pmyd.umb_M     Pseudemydura umbrina -- mitochondrion
        Pnch.niv_M     Panchlora nivea -- mitochondrion
        Pnos.asi_M     Phrynosoma asio -- mitochondrion
        Pnos.cor_M     Phrynosoma cornutum -- mitochondrion
        Pnos.dgl_M     Phrynosoma douglassii -- mitochondrion
        Pnos.mod_M     Phrynosoma modestum -- mitochondrion
        Ppha.aeg_M     Polyphaga aegyptiaca -- mitochondrion
        Pphr.gue_M     Pseudophryne guentheri -- mitochondrion
        Pptl.sp_M      Poptella sp. -- mitochondrion
        Pras.par_M     Pseudorasbora parva -- mitochondrion
        Prbl.pen_M     Parcoblatta pensylvanica -- mitochondrion
        Prcv.ca2_M     Procavia capensis -- mitochondrion
        Prcy.lo5_M     Procyon lotor -- mitochondrion
        Prhu.sp_M      Pyrrhulina sp. -- mitochondrion
        Prlo.lin_M     Prochilodus lineatus -- mitochondrion
        Prpl.ame_M     Periplaneta americana -- mitochondrion
        Prpl.aus_M     Periplaneta australasiae -- mitochondrion
        Prpl.bru_M     Periplaneta brunnea -- mitochondrion
        Prpl.ful_M     Periplaneta fuliginosa -- mitochondrion
        Prtp.dol_M     Protopterus dolloi -- mitochondrion
        Pryn.geo_M     Phrynops geoffroannus -- mitochondrion
        Pryn.gib_M     Phrynops gibbus -- mitochondrion
        Pryn.nas_M     Phrynops nasuta -- mitochondrion
        Psau.mea_M     Petrosaurus mearnsi -- mitochondrion
        Psau.tha_M     Petrosaurus thalassina -- mitochondrion
        Ptod.buc_M     Pantodon buchholzi -- mitochondrion
        Pysc.sur_M     Pycnoscelus surinamensis -- mitochondrion
        Rana_blE_M     Rana blythi -- mitochondrion
        Rana_blS_M     Rana blythi -- mitochondrion
        Rana_fin_M     Rana finchi -- mitochondrion
        Rana_ing_M     Rana ingeri -- mitochondrion
        Rana_lim_M     Rana limnocharis -- mitochondrion
        Rana_pal_M     Rana palavanensis -- mitochondrion
        Rana_pmc_M     Rana paramacrodon -- mitochondrion
        Rasb.pav_M     Rasbora paviei -- mitochondrion
        Ratt.no2_M     Rattus norvegicus -- mitochondrion
        Rdyt.leu_M     Rheodytes leukops -- mitochondrion
        Rhdn.vul_M     Rhaphiodon vulpinus -- mitochondrion
        Rhea_am3_M     Rhea americana -- mitochondrion
        Rhpr.mad_M     Rhyparobia maderae -- mitochondrion
        Rtcl.fla_M     Reticulotermes flavipes -- mitochondrion
        Salm.sa2_M     Salmo salar -- mitochondrion
        Satr.ang_M     Sator angustus -- mitochondrion
        Sclp.chr_M     Sceloporus chrysostictus -- mitochondrion
        Sclp.cla_M     Sceloporus clarki -- mitochondrion
        Sclp.cya_M     Sceloporus cyanogenys -- mitochondrion
        Sclp.dug_M     Sceloporus dugesi -- mitochondrion
        Sclp.for_M     Sceloporus formosus -- mitochondrion
        Sclp.grc_M     Sceloporus graciosus -- mitochondrion
        Sclp.grm_M     Sceloporus grammicus -- mitochondrion
        Sclp.jar_M     Sceloporus jarrovi -- mitochondrion
        Sclp.mag_M     Sceloporus magister -- mitochondrion
        Sclp.mal_M     Sceloporus malachiticus -- mitochondrion
        Sclp.mer_M     Sceloporus merriami -- mitochondrion
        Sclp.muc_M     Sceloporus mucronatus -- mitochondrion
        Sclp.occ_M     Sceloporus occidentalis -- mitochondrion
        Sclp.olv_M     Sceloporus olivaceus -- mitochondrion
        Sclp.orc_M     Sceloporus orcutti -- mitochondrion
        Sclp.poi_M     Sceloporus poinsetti -- mitochondrion
        Sclp.sca_M     Sceloporus scalaris -- mitochondrion
        Sclp.tae_M     Sceloporus taeniocnemis -- mitochondrion
        Sclp.tor_M     Sceloporus torquatus -- mitochondrion
        Sclp.un2_M     Sceloporus undulatus -- mitochondrion
        Sclp.var_M     Sceloporus variabilis -- mitochondrion
        Sclp.vir_M     Sceloporus virgatus -- mitochondrion
        Shlf.lat_M     Shelfordella lateralis -- mitochondrion
        Slmi.sp_M      Salminus sp. -- mitochondrion
        Slte.lam_M     Schultesia lampyridiformis -- mitochondrion
        Smil.pha_M     Smilisca phaeota -- mitochondrion
        Splg.put_M     Spilogale putorius -- mitochondrion
        Spod.fr2_M     Spodoptera frugiperda -- mitochondrion
        Spra.bar_M     Sphiraena barracuda -- mitochondrion
        Stdn.sp_M      Steindachnerina sp. -- mitochondrion
        Sus_scro_M     Sus scrofa -- mitochondrion
        Sypl.pal_M     Symploce pallens -- mitochondrion
        Syvi.cur_M     Sylvia curruca -- mitochondrion
        Tcht.alb_M     Tanichthys albonubes -- mitochondrion
        Tcne.sey_M     Tachycnemis seychellensis -- mitochondrion
        Tdur.his_M     Tropidurus hispidus -- mitochondrion
        Tdur.pli_M     Tropidurus plica -- mitochondrion
        Ther.pet_M     Therea petiveriana -- mitochondrion
        Trhu.man_M     Trichechus manatus -- mitochondrion
        Trth.pa2_M     Triportheus paranensis -- mitochondrion
        Trtm.ber_M     Trematomus bernacchii -- mitochondrion
        Trtm.lep_M     Trematomus lepidorhinus -- mitochondrion
        Trtm.loe_M     Trematomus loennbergi -- mitochondrion
        Trtm.new_M     Trematomus newnesi -- mitochondrion
        Trtm.sct_M     Trematomus scotti -- mitochondrion
        Tryp.cr2_M     Trypanosoma cruzi -- kinetoplast
        Ttgp.sp_M      Tetragonopterus sp. -- mitochondrion
        Tyrn.tyr_M     Tyrannus tyrannus -- mitochondrion
        Uma_nota_M     Uma notata -- mitochondrion
        Urss.am2_M     Ursus americanus -- mitochondrion
        Urss.ar4_M     Ursus arctos -- mitochondrion
        Usco.sup_M     Uranoscodon superciliosus -- mitochondrion
        Uta_palm_M     Uta palmeri -- mitochondrion
        Vert.alb_M     Verticillium albo-atrum -- mitochondrion
        Vert.da2_M     Verticillium dahliae -- mitochondrion
        Vert.dah_M     Verticillium dahliae -- mitochondrion
        Vomb.ur2_M     Vombatus ursinus -- mitochondrion
        Vulp.vu2_M     Vulpes vulpes -- mitochondrion
        Warc.spi_M     Warcupiella spinulosa -- mitochondrion
        Zlph.ca2_M     Zalophus californianus -- mitochondrion
        Zost.lat_M     Zosterops lateralis -- mitochondrion
        Zost.pal_M     Zosterops pallidus -- mitochondrion


Changes in short-ID and/or full names are listed below (RDP short-ID:full name):

              RDP Release 6.0                                RDP Release 7.0
  --------------------------------------             -------------------------------------
  Anas.pl4_M:Anas platyrhynchos -- mitochondrion     Anas_pl4_M:Anas platyrhynchos -- mitochondrion
  Llop.inc_M:Leiolopisma inconspicuum                Llop.inc_M:Leiolopisma inconspicuum -- mitochondrion
  Llop.mac_M:Leiolopisma maccanni                    Llop.mac_M:Leiolopisma maccanni -- mitochondrion
  Llop.nni_M:Leiolopisma nigriplantare               Llop.nni_M:Leiolopisma nigriplantare -- mitochondrion
  Llop.not_M:Leiolopisma notosaurus                  Llop.not_M:Leiolopisma notosaurus -- mitochondrion
  Llop.npg_M:Leiolopisma nigriplantare               Llop.npg_M:Leiolopisma nigriplantare -- mitochondrion
  Llop.npt_M:Leiolopisma nigriplantare               Llop.npt_M:Leiolopisma nigriplantare -- mitochondrion
  Llop.zel_M:Leiolopisma zelandicum                  Llop.zel_M:Leiolopisma zelandicum -- mitochondrion
  Must.put_M:Mustela putorius furo -- mitochondrion  Must.put_M:Mustela putorius -- mitochondrion
  Prmy.kee_M:Peromyscus maniculatus -- mitochondrion Prmy.kee_M:Peromyscus keeni -- mitochondrion
  Prmy.leu_M:Peromyscus maniculatus -- mitochondrion Prmy.leu_M:Peromyscus leucopus -- mitochondrion
  Srrl.sp1_M:Serrasalminae gen. sp. -- mitochondrion Srrl.sp1_M:Serrasalminae sp. -- mitochondrion
  Wlop.mra_M:Williopsis saturnus -- mitochondrion    Wlop.mra_M:Williopsis mrakii -- mitochondrion
  Xncs.ggi_M:Xenicus gilviventris -- mitochondrio    Xncs.ggi_M:Xenicus gilviventris -- mitochondrion
  Xncs.gri_M:Xenicus gilviventris -- mitochondrio    Xncs.gri_M:Xenicus gilviventris -- mitochondrion
  Xncs.lon_M:Xenicus longipes -- mitochondrio        Xncs.lon_M:Xenicus longipes -- mitochondrion

Changes in nucleotide sequence:
         Organism                                     Now represented by RDP name
  ----------------------------------                  ----------------------------
  Antl.am2_M:Antilocapra americana -- mitochondrion -- deleted      Antl.ame_M
  Asrn.pe2_M:Asterina pectinifera -- mitochondrion -- deleted       Asrn.pe3_M
  Ppte.sen_M:Polypterus senegalus -- mitochondrion -- deleted, <200 bp, RDP minimum

Changes in GenBank/EMBL associated accession numbers:
         Organism                             Organism
  ----------------------------------    ----------------------------
  Clmy.eug_M:L28929; L28930; L28931      Clmy.eug_M:L28930; L28929; L28931
  Cscr.cos_M:                            Cscr.cos_M:S76216
  Pter.cap_M:M81138                      Pter.cap_M:M81138; M81139

*******************
**  SSU_Prok.gb  **
*******************
The number of sequences included in the SSU_Prok.gb (small subunit
prokaryotic organisms - GenBank format) file increases from 4332 to 6205.
(4 sequences were deleted; 1877 sequences were added.)

The characters '~' and '-' represent alignment gap characters.
The character '.' represents missing data.
The character 'N' represents the presence of a nucleotide of
undetermined composition.

See the SSU_rRNA/SSU_Prok.alpha file for more information about the
following new organisms:

        RDP short-ID          Organism (genus species)
        ------------   -----------------------------------------
        Ab.anurly2     Aneurinibacillus aneurinilyticus
        Ab.anurly3     Aneurinibacillus aneurinilyticus
        Ab.migula2     Aneurinibacillus migulanus
        Ab.migulan     Aneurinibacillus migulanus
        Abc.phocae     Arcanobacterium phocae
        Abt.adiacn     Abiotrophia adiacens
        Abt.defect     Abiotrophia defectiva
        Ac.jenensi     Agrococcus jenensis
        Acb.indoli     Actinobacillus indolicus
        Acb.minor1     Actinobacillus minor
        Acb.porcin     Actinobacillus porcinus
        Acn.UN1P2      Acinetobacter sp.
        Act.bovis2     Actinomyces bovis
        Act.dentic     Actinomyces denticolens
        Act.georgi     Actinomyces georgiae
        Act.geren3     Actinomyces gerencseriae
        Act.hordvl     Actinomyces hordeovulneris
        Act.howell     Actinomyces howellii
        Act.israe5     Actinomyces israelii
        Act.meyeri     Actinomyces meyeri
        Act.naesl3     Actinomyces naeslundii
        Act.odont2     Actinomyces odontolyticus
        Act.odont3     Actinomyces odontolyticus
        Act.pyoge3     Actinomyces pyogenes
        Act.slacki     Actinomyces slackii
        Act.visco3     Actinomyces viscosus
        Adi.ambiv2     Acidianus ambivalens
        Adi.ambivl     Acidianus ambivalens
        Adi.brier2     Acidianus brierleyi
        Adi.brier3     Acidianus brierleyi
        Adi.brierl     Acidianus brierleyi
        Adi.infer2     Acidianus infernus
        Adi.infern     Acidianus infernus
        Adi.spTA1      Acidianus sp.
        Ag.sp3_10      Agrobacterium sp.
        Ag.tumef11     Agrobacterium tumefaciens
        Ag.vitis4      Agrobacterium vitis
        Agm.oltrph     Agromonas oligotrophica
        Altm.mleo2     Alteromonas macleodii
        Am.degensi     Ammonifex degensii
        Ama.oxali1     Achromatium oxaliferum
        Ama.oxali3     Achromatium oxaliferum
        Ama.oxali4     Achromatium oxaliferum
        Ama.oxali6     Achromatium oxaliferum
        Ama.oxali7     Achromatium oxaliferum
        Ama.oxali8     Achromatium oxaliferum
        Ama.oxalif     Achromatium oxaliferum
        Amd.atramn     Actinomadura atramentaria
        Amd.aurant     Actinomadura aurantiaca
        Amd.citrea     Actinomadura citrea
        Amd.coerul     Actinomadura coerulea
        Amd.cremea     Actinomadura cremea
        Amd.echino     Actinomadura echinospora
        Amd.fulves     Actinomadura fulvescens
        Amd.globos     Actinomadura glomerata
        Amd.kijan2     Actinomadura kijaniata
        Amd.kijani     Actinomadura kijaniata
        Amd.libano     Actinomadura libanotica
        Amd.lutflu     Actinomadura luteofluorescens
        Amd.macra      Actinomadura macra
        Amd.madur2     Actinomadura madurae
        Amd.madura     Actinomadura madurae
        Amd.rugato     Actinomadura rugatobispora
        Amd.verru2     Actinomadura verrucosospora
        Amd.verruc     Actinomadura verrucosospora
        Aob.sp1        Arcobacter sp.
        Ap.pernix1     Aeropyrum pernix
        Apl.aurant     Actinoplanes auranticolor
        Apl.brasil     Actinoplanes brasiliensis
        Apl.cyaneu     Actinoplanes cyaneus
        Apl.phlpp2     Actinoplanes philippinensis
        Apl.phlpp3     Actinoplanes philippinensis
        Apl.phlpp4     Actinoplanes philippinensis
        Apl.phlppn     Actinoplanes philippinensis
        Apl.reglar     Actinoplanes regularis
        Apt.evec_C     Angiopteris evecta -- chloroplast
        Arb.auresc     Arthrobacter aurescens
        Arb.hstdnl     Arthrobacter histidinolovorans
        Arb.ilicis     Arthrobacter ilicis
        Arb.oxydan     Arthrobacter oxydans
        Arb.spS2       Arthrobacter sp.
        Arb.sulfur     Arthrobacter sulfureus
        Arb.uratox     Arthrobacter uratoxydans
        Arg.fulgi2     Archaeoglobus fulgidus
        Arm.hphil5     Aeromonas hydrophila
        Arm.spBB16     Aeromonas sp.
        Arm.spBB3      Aeromonas sp.
        Arm.spBB6      Aeromonas sp.
        Arm.spBB7      Aeromonas sp.
        Arm.spBB8      Aeromonas sp.
        Armb.fast3     Aeromicrobium fastidiosum
        Asy.mirum2     Actinosynnema mirum
        Aub.Mainz      Aureobacterium sp.
        Azc.sp_pF6     Azoarcus sp.
        Azo.vinlnd     Azotobacter vinelandii
        Azr.cauli4     Azorhizobium caulinodans
        Azr.cauli5     Azorhizobium caulinodans
        Azr.cauli6     Azorhizobium caulinodans
        Azr.cauli7     Azorhizobium caulinodans
        Azs.irake3     Azospirillum irakense
        Azs.lipof9     Azospirillum lipoferum
        B.azotofo2     Bacillus azotoformans
        B.badius3      Bacillus badius
        B.circula3     Bacillus circulans
        B.coagula3     Bacillus coagulans
        B.firmus3      Bacillus firmus
        B.lentus3      Bacillus lentus
        B.simplex2     Bacillus simplex
        B.smithii3     Bacillus smithii
        B.sp12605      Bacillus sp.
        B.sp_fish      Bacillus sp.
        B.sporthe2     Bacillus sporothermodurans
        B.sporthe3     Bacillus sporothermodurans
        B.sporther     Bacillus sporothermodurans
        B.subtili9     Bacillus subtilis
        B.subtrrG2     Bacillus subtilis
        B.subtrrH2     Bacillus subtilis
        B.subtrrnA     Bacillus subtilis
        B.subtrrnB     Bacillus subtilis
        B.subtrrnD     Bacillus subtilis
        B.subtrrnE     Bacillus subtilis
        B.subtrrnI     Bacillus subtilis
        B.subtrrnJ     Bacillus subtilis
        B.subtrrnO     Bacillus subtilis
        B.subtrrnW     Bacillus subtilis
        B.thaeroph     Bacillus thermoaerophilus
        Bac.fragi2     Bacteroides fragilis
        Bar.clardg     Bartonella clarridgeiae
        Bar.quint3     Bartonella quintana
        Bar.spCatG     Bartonella vinsonii
        Bar.vinso5     Bartonella vinsonii
        Bb.agri1       Brevibacillus agri
        Bb.borstel     Brevibacillus borstelensis
        Bb.brevis3     Brevibacillus brevis
        Bb.centspr     Brevibacillus centrosporus
        Bb.choshin     Brevibacillus choshinensis
        Bb.formosu     Brevibacillus formosus
        Bb.latero4     Brevibacillus laterosporus
        Bb.prbrevi     Brevibacillus parabrevis
        Bb.reuszer     Brevibacillus reuszeri
        Bcb.alimnt     Brachybacterium alimentarium
        Bcb.conglm     Brachybacterium conglomeratum
        Bcb.faeci2     Brachybacterium faecium
        Bcb.faecim     Brachybacterium faecium
        Bcb.nester     Brachybacterium nesterenkovii
        Bcb.tyfrmn     Brachybacterium tyrofermentans
        Bdr.10324      Bradyrhizobium sp.
        Bdr.MA1445     Bradyrhizobium sp.
        Bdr.MA1505     Bradyrhizobium sp.
        Bdr.MA1510     Bradyrhizobium sp.
        Bdr.MA1555     Bradyrhizobium sp.
        Bdr.MA1574     Bradyrhizobium sp.
        Bdr.MA1576     Bradyrhizobium sp.
        Bdr.MA1586     Bradyrhizobium sp.
        Bdr.MA1587     Bradyrhizobium sp.
        Bdr.MA1589     Bradyrhizobium sp.
        Bdr.MA1600     Bradyrhizobium sp.
        Bdr.MA1605     Bradyrhizobium sp.
        Bdr.MAR411     Bradyrhizobium sp.
        Bdr.MAR471     Bradyrhizobium sp.
        Bdr.MAR967     Bradyrhizobium sp.
        Bdr.NC123      Bradyrhizobium sp.
        Bdr.elkani     Bradyrhizobium elkanii
        Bdr.japo10     Bradyrhizobium japonicum
        Bdr.japon6     Bradyrhizobium japonicum
        Bdr.japon7     Bradyrhizobium japonicum
        Bdr.japon8     Bradyrhizobium japonicum
        Bdr.japon9     Bradyrhizobium japonicum
        Bdr.liaoni     Bradyrhizobium liaoningensis
        Bdr.lupini     Bradyrhizobium lupini
        Bdr.sp1977     Bradyrhizobium sp.
        Bdr.sp32H1     Bradyrhizobium sp.
        Bdr.sp55S      Bradyrhizobium sp.
        Bdr.spDesm     Bradyrhizobium sp.
        Bdr.spNC6      Bradyrhizobium sp.
        Bdr.spSMS2     Bradyrhizobium sp.
        Bdr.spTAi2     Bradyrhizobium sp.
        Bdr.spT_1      Bradyrhizobium sp.
        Beg.alba       Beggiatoa alba
        Beg.sp1401     Beggiatoa sp.
        Bif.lactis     Bifidobacterium lactis
        Bif.sp1        Bifidobacterium sp.
        Bl.slfvird     Blastochloris sulfoviridis
        Bo.thiooxi     Bosea thiooxidans
        Bor.afzel7     Borrelia afzelii
        Bor.andrs2     Borrelia andersonii
        Bor.andrsn     Borrelia andersonii
        Bor.barbor     Borrelia barbouri
        Bor.borg22     Borrelia burgdorferi
        Bor.burg17     Borrelia burgdorferi
        Bor.burg18     Borrelia burgdorferi
        Bor.burg20     Borrelia burgdorferi
        Bor.burg21     Borrelia burgdorferi
        Bor.coria2     Borrelia coriaceae
        Bor.crocid     Borrelia crocidurae
        Bor.dutton     Borrelia duttoni
        Bor.garin5     Borrelia burgdorferi
        Bor.hermi6     Borrelia hermsii
        Bor.hispan     Borrelia hispanica
        Bor.japon3     Borrelia japonica
        Bor.japon4     Borrelia japonica
        Bor.sp2        Borrelia sp.
        Bor.spFCB1     Borrelia sp.
        Bor.theilr     Borrelia theileri
        Botr.bit_C     Botrychium biternatum -- chloroplast
        Br.diminut     Brevundimonas diminuta
        Brb.iodin2     Brevibacterium iodinum
        Btv.crosst     Butyrivibrio crossotus
        Btv.fbrsl2     Butyrivibrio fibrisolvens
        Btv.fbrsl3     Butyrivibrio fibrisolvens
        Btv.fbrsl4     Butyrivibrio fibrisolvens
        Btv.fbrsl5     Butyrivibrio fibrisolvens
        Btv.fbrsl6     Butyrivibrio fibrisolvens
        Btv.fbrsl7     Butyrivibrio fibrisolvens
        Btv.fbrslv     Butyrivibrio fibrisolvens
        Bur.cepac3     Burkholderia cepacia
        Bur.cepac4     Burkholderia cepacia
        Bur.pmall2     Burkholderia pseudomallei
        Bur.pmall3     Burkholderia pseudomallei
        Bur.pmall4     Burkholderia pseudomallei
        Bur.pmall5     Burkholderia pseudomallei
        Bur.spCRE7     Burkholderia sp.
        Bur.spGSOY     Burkholderia sp.
        Bur.spN2P5     Burkholderia sp.
        Bur.spN2P6     Burkholderia sp.
        Bur.spN3P2     Burkholderia sp.
        C.acebut10     Clostridium acetobutylicum
        C.acebut11     Clostridium acetobutylicum
        C.acebut12     Clostridium acetobutylicum
        C.acebut13     Clostridium acetobutylicum
        C.algidcrn     Clostridium algidicarnis
        C.beijeri7     Clostridium beijerinckii
        C.beijeri8     Clostridium beijerinckii
        C.beijeri9     Clostridium beijerinckii
        C.chauvoei     Clostridium chauvoei
        C.grantii      Clostridium grantii
        C.pascui1      Clostridium pascui
        C.pilifor2     Clostridium piliforme
        C.proteocl     Clostridium proteoclasticum
        C.sacperb2     Clostridium saccharoperbutylacetonicum
        C.septicum     Clostridium septicum
        C.spCM19       Clostridium sp.
        C.sporosp2     Clostridium sporosphaeroides
        C.symbios2     Clostridium symbiosum
        C.ultunens     Clostridium ultunense
        C.viride       Clostridium viride
        Cap.gingi3     Capnocytophaga gingivalis
        Cap.granu2     Capnocytophaga granulosa
        Cap.granul     Capnocytophaga granulosa
        Cap.haemol     Capnocytophaga haemolytica
        Cap.ochra3     Capnocytophaga ochracea
        Cap.ochra4     Capnocytophaga ochracea
        Cap.ochra5     Capnocytophaga ochracea
        Cap.ochra6     Capnocytophaga ochracea
        Cap.spFDC8     Capnocytophaga sp.
        Cap.spS1       Capnocytophaga sp.
        Cap.spS1b      Capnocytophaga sp.
        Cap.spS3       Capnocytophaga sp.
        Cat.caurul     Catenuloplanes caeruleus
        Cat.japon1     Catenuloplanes japonicus
        Cau.CDF20a     Caulobacter sp.
        Cau.CDF35      Caulobacter sp.
        Cau.CDFo       Caulobacter sp.
        Cau.spMR1      Caulobacter sp.
        Cau.spTS1      Caulobacter sp.
        Ch.marism2     Chromohalobacter marismortui
        Ch.marism3     Chromohalobacter marismortui
        Ch.marism4     Chromohalobacter marismortui
        Ch.marismo     Chromohalobacter marismortui
        Chl.limic2     Chlorobium limicola
        Chl.phbact     Chlorobium phaeobacteroides
        Chl.phvibr     Chlorobium phaeovibrioides
        Chl.vibri2     Chlorobium vibrioforme
        Chr.gracil     Chromatium gracile
        Chra.sp_C      Chara sp. -- chloroplast
        Cibt.gla_C     Cibotium glaucum -- chloroplast
        Clch.orb_C     Coleochaete orbicularis -- chloroplast
        Cllm.biazo     Cellulomonas biazotea
        Cllm.cllul     Cellulomonas cellulans
        Cllm.clsea     Cellulomonas cellasea
        Cllm.fermn     Cellulomonas fermentans
        Cllm.fimi      Cellulomonas fimi
        Cllm.flavi     Cellulomonas flavigena
        Cllm.gelid     Cellulomonas gelida
        Cllm.turba     Cellulomonas turbata
        Cllm.uda       Cellulomonas uda
        Clm.pneum3     Chlamydia pneumoniae
        Clm.pneum4     Chlamydia pneumoniae
        Clm.psitt2     Chlamydia psittaci
        Clm.psitt3     Chlamydia psittaci
        Clmy.pal_C     Chlamydomonas pallidostigmatica -- chloroplast
        Clmy.par_C     Chlamydomonas parkeae -- chloroplast
        Clst.ehr_C     Closterium ehrenbergii -- chloroplast
        Clv.mich10     Clavibacter michiganensis
        Clv.mich11     Clavibacter michiganensis
        Clv.mich12     Clavibacter michiganensis
        Clv.michg6     Clavibacter michiganensis
        Clv.michg7     Clavibacter michiganensis
        Clv.michg8     Clavibacter michiganensis
        Clv.michg9     Clavibacter michiganensis
        Cn.morbi       Catonella morbi
        Coco.nuc_C     Cocos nucifera -- chloroplast
        Com.baltic     Comamonas baltica
        Cor.G4330      Corynebacterium sp.
        Cor.G5911      Corynebacterium sp.
        Cor.afrme2     Corynebacterium afermentans
        Cor.afrme3     Corynebacterium afermentans
        Cor.ammon2     Corynebacterium ammoniagenes
        Cor.ammoni     Corynebacterium ammoniagenes
        Cor.amyco2     Corynebacterium amycolatum
        Cor.amycol     Corynebacterium amycolatum
        Cor.asperm     Corynebacterium asperum
        Cor.auris      Corynebacterium auris
        Cor.bovis2     Corynebacterium bovis
        Cor.bovis3     Corynebacterium bovis
        Cor.callu2     Corynebacterium callunae
        Cor.coylei     Corynebacterium coyleiae
        Cor.cystt2     Corynebacterium cystitidis
        Cor.cystt3     Corynebacterium cystitidis
        Cor.dipht2     Corynebacterium diphtheriae
        Cor.flave2     Corynebacterium flavescens
        Cor.flaves     Corynebacterium flavescens
        Cor.gluta4     Corynebacterium glutamicum
        Cor.hoagii     Corynebacterium hoagii
        Cor.jeike2     Corynebacterium jeikeium
        Cor.kutsc3     Corynebacterium kutscheri
        Cor.matru2     Corynebacterium matruchotii
        Cor.matruc     Corynebacterium matruchotii
        Cor.minsi3     Corynebacterium minutissimum
        Cor.mycet2     Corynebacterium mycetoides
        Cor.pilos3     Corynebacterium pilosum
        Cor.propn2     Corynebacterium propinquum
        Cor.propnq     Corynebacterium propinquum
        Cor.psdph2     Corynebacterium pseudodiphtheriticum
        Cor.psdpht     Corynebacterium pseudodiphtheriticum
        Cor.psgeni     Corynebacterium pseudogenitalium
        Cor.pstub7     Corynebacterium pseudotuberculosis
        Cor.renal7     Corynebacterium renale
        Cor.segmnt     Corynebacterium "segmentosum"
        Cor.seminl     Corynebacterium seminale
        Cor.stria2     Corynebacterium striatum
        Cor.striat     Corynebacterium striatum
        Cor.ulcer3     Corynebacterium diphtheriae
        Cor.ureal2     Corynebacterium urealyticum
        Cor.urealy     Corynebacterium urealyticum
        Cor.xeros3     Corynebacterium xerosis
        Cor.xeros4     Corynebacterium xerosis
        Cor.xeros5     Corynebacterium xerosis
        Crs.spCP1      Cristispira sp.
        Csb.balus2     Chryseobacterium balustinum
        Csb.gleum2     Chryseobacterium gleum
        Csb.indlo2     Chryseobacterium indologenes
        Csb.menin3     Chryseobacterium meningosepticum
        Csg.arsena     Chrysiogenes arsenatis
        Ctl.citre2     Catellatospora citrea
        Ctl.citre3     Catellatospora citrea
        Ctl.citrea     Catellatospora citrea
        Ctl.ferrug     Catellatospora ferruginea
        Ctl.tsuoen     Catellatospora tsunoense
        Cynp.pa3_C     Cyanophora paradoxa -- cyanelle
        Cynp.pa4_C     Cyanophora paradoxa -- cyanelle
        D.grandis1     Deinococcus grandis
        D.prtlytic     Deinococcus proteolyticus
        D.radiodu2     Deinococcus radiodurans
        D.radiophl     Deinococcus radiophilus
        D.radiopug     Deinococcus radiopugnans
        D.spS34        Deinococcus sp.
        Dc.nishino     Dermacoccus nishinomiyaensis
        Dcl.agitat     Dechlorimonas agitatus
        Dct.auran3     Dactylosporangium aurantiacum
        Dct.auran4     Dactylosporangium aurantiacum
        Dct.fulvu2     Dactylosporangium fulvum
        Dct.roseu2     Dactylosporangium roseum
        Dct.roseu3     Dactylosporangium roseum
        Dct.thail2     Dactylosporangium thailandense
        Dct.thailn     Dactylosporangium thailandense
        Dct.vinac2     Dactylosporangium vinaceum
        Dfi.frappi     Desulfitobacterium frappieri
        Dfi.hafnie     Desulfitobacterium hafniense
        Dfi.spPCE1     Desulfitobacterium sp.
        Dfr.thphil     Deferribacter thermophilus
        Dfs.glycol     Desulfofustis glycolicus
        Dgl.thmop2     Dictyoglomus thermophilum
        Dhb.retbae     Desulfohalobium retbaense
        Dood.max_C     Doodia maxima -- chloroplast
        Drb.homin2     Dermabacter hominis
        Drh.acthrm     Desulforhabdus acetothermus
        Drh.amnign     Desulforhabdus amnigenus
        Drp.vacuol     Desulforhopalus vacuolatus
        Dsm.palmit     Desulfuromonas palmitatis
        Dsv.61890E     Desulfovibrio sp.
        Dsv.G3_100     Desulfovibrio sp.
        Dsv.acryli     Desulfovibrio acrylicus
        Dsv.fairfl     Desulfovibrio fairfieldensis
        Dsv.gabonn     Desulfovibrio gabonensis
        Dsv.halphl     Desulfovibrio halophilus
        Dsv.profun     Desulfovibrio profundus
        Dsv.sp3        Desulfovibrio sp.
        Dsv.spKH2      Desulfovibrio sp.
        Dsv.spKRS1     Desulfovibrio sp.
        Dsv.spKRS2     Desulfovibrio sp.
        Dsv.spPIB      Desulfovibrio sp.
        Dsv.termit     Desulfovibrio termitidis
        Dz.maris3      Dietzia maris
        E.coli10       Escherichia coli
        E.coli1775     Escherichia coli
        E.coli4100     Escherichia coli
        E.coli5922     Escherichia coli
        E.coliPK3      Escherichia coli
        E.colirnA2     Escherichia coli
        E.colirnA3     Escherichia coli
        E.colirnB2     Escherichia coli
        E.colirnB3     Escherichia coli
        E.colirnC2     Escherichia coli
        E.colirnC3     Escherichia coli
        E.colirnD2     Escherichia coli
        E.colirnD3     Escherichia coli
        E.colirnE2     Escherichia coli
        E.colirnE3     Escherichia coli
        E.colirnG2     Escherichia coli
        E.colirnG3     Escherichia coli
        E.colirnH2     Escherichia coli
        E.colirnH3     Escherichia coli
        E.colirnH4     Escherichia coli
        E.hermanni     Escherichia hermannii
        E.spunknwn     Escherichia sp.
        E.vulneris     Escherichia vulneris
        Ec.haloal2     Ectothiorhodospira haloalkaliphila
        Ec.haloalk     Ectothiorhodospira haloalkaliphila
        Ec.marina      Ectothiorhodospira marina
        Ec.marismo     Ectothiorhodospira marismortui
        Ec.mobilis     Ectothiorhodospira mobilis
        Ec.shapos2     Ectothiorhodospira shaposhnikovii
        Ec.vacuola     Ectothiorhodospira vacuolata
        Eco.12316      Enterococcus sp.
        Ehr.canis2     Ehrlichia canis
        Emb.brevis     Empedobacter brevis
        Emil.hux_C     Emiliania huxleyi -- chloroplast
        Enb.spHC_B     Enterobacter sp.
        Ephd.tri_C     Ephedra trifurca -- chloroplast
        Eqst.arv_C     Equisetum arvense -- chloroplast
        Eub.saphen     Eubacterium saphenum
        Eub.timid2     Eubacterium timidum
        Eub.timidm     Eubacterium timidum
        Ew.americ2     Ewingella americana
        Ew.america     Ewingella americana
        Exg.acetyl     Exiguobacterium acetylicum
        Exg.sp7_3      Exiguobacterium sp.
        F.branchio     Flavobacterium branchiophilum
        F.mizutai2     Flavobacterium mizutaii
        F.ogurii       Flavobacterium ogurii
        F.okeanoko     Flavobacterium okeanokoites
        F.progurii     Flavobacterium paraogurii
        F.yabuuchi     Flavobacterium yabuuchiae
        Fb.limicol     Filibacter limicola
        Flc.spS36      Flectobacillus sp.
        Flu.bozem2     Fluoribacter bozemanae
        Flu.bozem3     Fluoribacter bozemanae
        Flu.dumof3     Fluoribacter dumoffii
        Flx.marit3     Flexibacter maritimus
        Fm.oryzhab     Flavimonas oryzihabitans
        Fnc.tula20     Francisella tularensis
        Fnc.tula21     Francisella tularensis
        Fra.spCori     Frankia sp.
        Frd.antarc     Friedmanniella antarctica
        Gbc.chapll     Geobacter "chapelleii"
        Gbc.hygenl     Geobacter "hydrogenophilus"
        Gdp.obscu2     Geodermatophilus obscurus
        Glth.memb2     Gloeothece membranacea
        Gonm.pec_C     Gonium pectorale -- chloroplast
        Gor.aichi2     Gordona aichiensis
        Gor.bronc4     Gordona bronchialis
        Gor.rubpe2     Gordona rubropertinctus
        Gor.sputi2     Gordona sputi
        Gor.sputi3     Gordona sputi
        Gor.sputi4     Gordona sputi
        Gor.terra3     Gordona terrae
        Gs.barnesi     "Geospirillum barnesii"
        Gt.ferment     "Geothrix fermentans"
        H.inflrrnA     Haemophilus influenzae
        H.inflrrnB     Haemophilus influenzae
        H.inflrrnC     Haemophilus influenzae
        H.inflrrnD     Haemophilus influenzae
        H.inflrrnE     Haemophilus influenzae
        H.inflrrnF     Haemophilus influenzae
        H.influen5     Haemophilus influenzae
        H.influen6     Haemophilus influenzae
        H.influen7     Haemophilus influenzae
        H.influen8     Haemophilus influenzae
        H.parainf2     Haemophilus parainfluenzae
        Haf.alvei2     Hafnia alvei
        Han.lacur2     Haloanaerobium lacuroseus
        Han.sacsac     Haloanaerobium saccharolyticum
        Han.sacsen     Haloanaerobium saccharolyticum
        Har.argent     Haloarcula argentinensis
        Har.mukoht     Haloarcula mukohataei
        Har.valli2     Haloarcula vallismortis
        Har.vallis     Haloarcula vallismortis
        Hb.salinar     Halobacterium salinarium
        Hbac.aceet     Halobacteroides acetoethylicus
        Hbac.halo2     Halobacteroides halobius
        Hbl.litora     Halobacillus litoralis
        Hbm.gomorr     Halobaculum gomorrense
        Hla.chitnv     Haloanaerobacter chitinovorans
        Hla.lacun2     Haloanaerobacter lacunaris
        Hlb.Mainz      Helicobacter sp.
        Hlb.hepat5     Helicobacter hepaticus
        Hlb.pyrrnA     Helicobacter pylori
        Hlb.pyrrnB     Helicobacter pylori
        Hlb.trogon     Helicobacter trogontum
        Hlm.cupida     Halomonas cupida
        Hlm.eurih2     Halomonas eurihalina
        Hlm.euriha     Halomonas eurihalina
        Hlm.haldur     Halomonas halodurans
        Hlm.pacfca     Halomonas pacifica
        Hlm.salin2     Halomonas salina
        Hlm.salina     Halomonas salina
        Hlm.sglac2     Halomonas subglaciescola
        Hlm.venust     Halomonas venusta
        Hrh.abdelm     Halorhodospira abdelmalekii
        Hrh.halchl     Halorhodospira halochloris
        Hrh.halph2     Halorhodospira halophila
        Hrh.halphl     Halorhodospira halophila
        Hth.butyli     Hyperthermus butylicus
        Iset.mel_C     Isoetes melanopoda -- chloroplast
        Isoc.sp_C      Isochrysis sp. -- chloroplast
        Jhn.ignava     Johnsonella ignava
        Jns.denitr     Jonesia denitrificans
        Junp.vir_C     Juniperus virginiana -- chloroplast
        K.pneumon2     Klebsiella pneumoniae
        K.pneumoni     Klebsiella pneumoniae
        Kc.rosea       Kocuria rosea
        Kc.varians     Kocuria varians
        Klbm.fla_C     Klebsormidium flaccidum -- chloroplast
        Ks.auranti     Kineosporia aurantiaca
        Ky.sedntrs     Kytococcus sedentarius
        L.casei_al     Lactobacillus casei
        L.casei_ca     Lactobacillus casei
        L.casei_pp     Lactobacillus casei
        L.casei_to     Lactobacillus casei
        L.oris2        Lactobacillus oris
        L.panis1       Lactobacillus panis
        L.pentosus     Lactobacillus pentosus
        L.plantar3     Lactobacillus plantarum
        L.prcasei      Lactobacillus paracasei
        L.rhamnos2     Lactobacillus rhamnosus
        L.sp10776      Lactobacillus sp.
        Lbc.komaga     Leucobacter komagatae
        Lct.mucor      Leucothrix mucor
        Leg.adelai     Legionella adelaidensis
        Leg.anisa2     Legionella anisa
        Leg.brmngh     Legionella birminghamensis
        Leg.brune2     Legionella brunensis
        Leg.cherr2     Legionella cherrii
        Leg.cinci2     Legionella cincinnatiensis
        Leg.donald     Legionella donaldsonii
        Leg.feele3     Legionella feeleii
        Leg.frfldn     Legionella fairfieldensis
        Leg.geesti     Legionella geestiana
        Leg.gorman     Legionella gormanii
        Leg.gratia     Legionella gratiana
        Leg.israe2     Legionella israelensis
        Leg.james2     Legionella jamestowniensis
        Leg.lansng     Legionella lansingensis
        Leg.londin     Legionella londiniensis
        Leg.lytic2     Legionella lytica
        Leg.moravi     Legionella moravica
        Leg.nautar     Legionella nautarum
        Leg.oakrd2     Legionella oakridgensis
        Leg.parisn     Legionella parisiensis
        Leg.quater     Legionella quateirensis
        Leg.quinlv     Legionella quinlivanii
        Leg.rubri2     Legionella rubrilucens
        Leg.shakes     Legionella shakespearei
        Leg.stcruc     Legionella santicrucis
        Leg.steig2     Legionella steigerwaltii
        Leg.sthel2     Legionella sainthelensi
        Leg.tucson     Legionella tucsonensis
        Leg.wdswr2     Legionella wadsworthii
        Leg.worsle     Legionella worsleiensis
        Llb.boryan     Leptolyngbya boryanum
        Llb.foveol     Leptolyngbya foveolarum
        Llb.sp135      Leptolyngbya sp.
        Lpod.dig_C     Lycopodium digitatum -- chloroplast
        Lpp.ferro3     Leptospirillum ferrooxidans
        Lpt.bucca2     Leptotrichia bucallis
        Lpt.microb     Leptotrichia microbii
        Lw.intcell     Lawsonia intracellularis
        Lygo.jap_C     Lygodium japonicum -- chloroplast
        M.agalact2     Mycoplasma agalactiae
        M.alkalesc     Mycoplasma alkalescens
        M.bovirhi3     Mycoplasma bovirhinis
        M.bovis2       Mycoplasma bovis
        M.bovoculi     Mycoplasma bovoculi
        M.canaden3     Mycoplasma canadense
        M.capric10     Mycoplasma capricolum
        M.caprico2     Mycoplasma capricolum
        M.caprico3     Mycoplasma capricolum
        M.caprico4     Mycoplasma capricolum
        M.caprico5     Mycoplasma capricolum
        M.caprico6     Mycoplasma capricolum
        M.caprico7     Mycoplasma capricolum
        M.caprico8     Mycoplasma capricolum
        M.caprico9     Mycoplasma capricolum
        M.conjunct     Mycoplasma conjunctivae
        M.genital3     Mycoplasma genitalium
        M.hyophry2     Mycoplasma hyopharyngis
        M.hyosyno2     Mycoplasma hyosynoviae
        M.iowae4       Mycoplasma iowae
        M.mlo.Caja     mycoplasma-like organism
        M.mlo.Coco     mycoplasma-like organism
        M.mlo.Veit     mycoplasma-like organism
        M.mlo.plum     mycoplasma-like organism
        M.mycoid10     Mycoplasma mycoides
        M.mycoid11     Mycoplasma mycoides
        M.mycoide4     Mycoplasma mycoides
        M.mycoide5     Mycoplasma mycoides
        M.mycoide6     Mycoplasma mycoides
        M.mycoide7     Mycoplasma mycoides
        M.mycoide8     Mycoplasma mycoides
        M.mycoide9     Mycoplasma mycoides
        M.ovipneu3     Mycoplasma ovipneumoniae
        M.pneumon3     Mycoplasma pneumoniae
        M.pullorum     Mycoplasma pullorum
        M.putrefa2     Mycoplasma putrefaciens
        M.spPG50_2     Mycoplasma sp.
        M.spPG50_3     Mycoplasma sp.
        M.sturnida     Mycoplasma sturnidae
        M.sualvi3      Mycoplasma sualvi
        M.synovia3     Mycoplasma synoviae
        Mb.tauDEL3     Methanobacterium thermoautotrophicum
        Mb.tauDEL4     Methanobacterium thermoautotrophicum
        Mb.wolfei      Methanobacterium wolfei
        Mba.georgn     Marinobacterium georgiense
        Mbf.hylyts     Microbulbifer hydrolyticus
        Mbsp.aerat     Microbispora aerata
        Mbsp.ameth     Microbispora amethystogenes
        Mbsp.chrom     Microbispora chromogenes
        Mbsp.diast     Microbispora diastatica
        Mbsp.parva     Microbispora parva
        Mbsp.thdia     Microbispora thermodiastatica
        Mbsp.thros     Microbispora thermorosea
        Mc.aeolic2     Methanococcus "aeolicus"
        Mc.deltae2     Methanococcus deltae
        Mc.janrrnA     Methanococcus jannaschii
        Mc.janrrnB     Methanococcus jannaschii
        Mc.maripa2     Methanococcus maripaludis
        Mc.maripa3     Methanococcus maripaludis
        Mc.maripa4     Methanococcus maripaludis
        Mc.maripa5     Methanococcus maripaludis
        Mc.voltae2     Methanococcus voltae
        Mc.voltae3     Methanococcus voltae
        Mca.gracil     Methylocaldum gracile
        Mca.szeged     Methylocaldum szegediense
        Mca.tepidu     Methylocaldum tepidum
        Mccl.7420      Microcoleus sp.
        Mcl.phpho2     Microlunatus phosphovorus
        Mcs.aerug4     Microcystis aeruginosa
        Mcs.aerug5     Microcystis aeruginosa
        Mcs.aerug6     Microcystis aeruginosa
        Mcs.aerug7     Microcystis aeruginosa
        Mcs.elaben     Microcystis elabens
        Mcs.holsat     Microcystis holsatica
        Mcs.sp139      Microcystis sp.
        Mcs.viridi     Microcystis viridis
        Mcs.wesnb2     Microcystis wesenbergii
        Mcs.wesnbr     Microcystis wesenbergii
        Mms.aurant     Micromonospora aurantiaca
        Mms.brnnea     Micromonospora brunnea
        Mms.carbo2     Micromonospora carbonacea
        Mms.carbon     Micromonospora carbonacea
        Mms.chersi     Micromonospora chersinia
        Mms.coerul     Micromonospora coerulea
        Mms.echns2     Micromonospora echinospora
        Mms.echns3     Micromonospora echinospora
        Mms.echnsp     Micromonospora echinospora
        Mms.halph2     Micromonospora halophytica
        Mms.halphy     Micromonospora halophytica
        Mms.inosit     Micromonospora inositola
        Mms.olivas     Micromonospora olivasterospora
        Mms.preoch     Micromonospora purpureochromogenes
        Mms.purpur     Micromonospora purpurea
        Mms.rhodrn     Micromonospora rhodorangea
        Mms.rosari     Micromonospora rosaria
        Mp.marina      Methylophaga marina
        Mp.thalas2     Methylophaga thalassica
        Mp.thalass     Methylophaga thalassica
        Mrc.albus1     Marinococcus albus
        Mrt.marinu     "Moritella marinus"
        Mrx.caviae     Moraxella caviae
        Mrx.cuncul     Moraxella cuniculi
        Mrx.lacun2     Moraxella lacunata
        Mrx.spS2       Moraxella sp.
        Msp.spbog      Methanospirillum sp.
        Msr.spbog      Methanosarcina sp.
        Mth.parvic     Microthrix parvicella
        Mts.prunae     Metallosphaera prunae
        Mts.sedul2     Metallosphaera sedula
        Mts.sedul3     Metallosphaera sedula
        Mts.sedula     Metallosphaera sedula
        Mts.spTA2      Metallosphaera sp.
        Mtt.africa     Microtetraspora africana
        Mtt.angios     Microtetraspora angiospora
        Mtt.fastid     Microtetraspora fastidiosa
        Mtt.fusca1     Microtetraspora fusca
        Mtt.glauc2     Microtetraspora glauca
        Mtt.glauca     Microtetraspora glauca
        Mtt.helvat     Microtetraspora helvata
        Mtt.nivalb     Microtetraspora niveoalba
        Mtt.plychr     Microtetraspora polychroma
        Mtt.pusill     Microtetraspora pusilla
        Mtt.rectic     Microtetraspora recticatena
        Mtt.roseol     Microtetraspora roseola
        Mtt.salmo2     Microtetraspora salmonea
        Mtt.salmon     Microtetraspora salmonea
        Mtt.spiral     Microtetraspora spiralis
        My.odorat2     Myroides odoratus
        Myb.chlph3     Mycobacterium chlorophenolicum
        Myb.consp2     Mycobacterium conspicuum
        Myb.conspc     Mycobacterium conspicuum
        Myb.fortu2     Mycobacterium fortuitum
        Myb.fortu3     Mycobacterium fortuitum
        Myb.hassia     Mycobacterium hassiacum
        Myb.hodler     Mycobacterium hodleri
        Myb.lenfl2     Mycobacterium lentiflavum
        Myb.lenfl3     Mycobacterium lentiflavum
        Myb.lenfla     Mycobacterium lentiflavum
        Myb.marin2     Mycobacterium marinum
        Myb.sp333      Mycobacterium sp.
        Myb.sp51       Mycobacterium sp.
        Myb.sp6        Mycobacterium sp.
        Myb.tilbrg     Mycobacterium tilburgii
        Myp.ramosa     Mycoplana ramosa
        Myp.segnis     Mycoplana segnis
        Ncr.jense2     Nocardioides jensenii
        Ncr.plant2     Nocardioides plantarum
        Ncr.simpl3     Nocardioides simplex
        Nmn.aestua     Nitrosomonas aestuarii
        Nmn.commun     Nitrosomonas communis
        Nmn.crytol     Nitrosomonas cryotolerans
        Nmn.europ3     Nitrosomonas europaea
        Nmn.eutro2     Nitrosomonas eutropha
        Nmn.halop2     Nitrosomonas halophila
        Nmn.haloph     Nitrosomonas halophila
        Nmn.marin2     Nitrosomonas marina
        Nmn.marin3     Nitrosomonas marina
        Nmn.nitros     Nitrosomonas nitrosa
        Nmn.oltrph     Nitrosomonas oligotropha
        Nmn.spNm33     Nitrosomonas sp.
        Nmn.spNm41     Nitrosomonas sp.
        Nmn.spNm58     Nitrosomonas sp.
        Nmn.spNm84     Nitrosomonas sp.
        Nmn.spNm86     Nitrosomonas sp.
        Nmn.ureae2     Nitrosomonas ureae
        Nmn.ureae      Nitrosomonas ureae
        Noc.aster3     Nocardia asteroides
        Noc.aster4     Nocardia asteroides
        Noc.brasi3     Nocardia brasiliensis
        Noc.carne3     Nocardia carnea
        Noc.farci5     Nocardia farcinica
        Noc.otiti3     Nocardia otitidiscaviarum
        Noc.otiti4     Nocardia otitidiscaviarum
        Noc.trnsv3     Nocardia transvalensis
        Nrp.alba1      Nocardiopsis alba
        Nrp.alba2      Nocardiopsis alba
        Nrp.albrub     Nocardiopsis alborubida
        Nrp.antarc     Nocardiopsis antarctica
        Nrp.dasson     Nocardiopsis dassonvillei
        Nrp.lister     Nocardiopsis listeri
        Nrp.lucent     Nocardiopsis lucentensis
        Nsp.marin2     Nitrospira marina
        Nss.sp1        Nitrosospira sp.
        Nss.sp40KI     Nitrosospira sp.
        Nss.spAF       Nitrosospira sp.
        Nss.spB6       Nitrosospira sp.
        Nss.spD11      Nitrosospira sp.
        Nss.spGM4      Nitrosospira sp.
        Nss.spL115     Nitrosospira sp.
        Nss.spT7       Nitrosospira sp.
        Ntc.amylyt     Natronococcus amylolyticus
        Ocb.12950      Ochrobactrum sp.
        Ocb.anthr2     Ochrobactrum anthropi
        Opgl.eng_C     Ophioglossum engelmannii -- chloroplast
        Osc.agardh     "Oscillatoria agardhii"
        Osc.corall     "Oscillatoria corallinae"
        Osmu.cin_C     Osmunda cinnamomea -- chloroplast
        Pae.ahiben     Paenibacillus ahibensis
        Pae.aligin     Paenibacillus aliginolyticus
        Pae.alvei      Paenibacillus alvei
        Pae.amyly2     Paenibacillus amylolyticus
        Pae.apiari     Paenibacillus apiarius
        Pae.azofix     Paenibacillus azotofixans
        Pae.chndro     Paenibacillus chondroitinus
        Pae.curdly     Paenibacillus curdlanolyticus
        Pae.glulyt     Paenibacillus glucanolyticus
        Pae.illnoi     Paenibacillus illinoisensis
        Pae.kobens     Paenibacillus kobensis
        Pae.lautu2     Paenibacillus lautus
        Pae.macern     Paenibacillus macerans
        Pae.peoria     Paenibacillus peoriae
        Pae.thiamn     Paenibacillus thiaminolyticus
        Pae.valid4     Paenibacillus validus
        Pae.validu     Paenibacillus validus
        Pal.antarc     Pseudoalteromonas antarctica
        Pal.atlant     Pseudoalteromonas atlantica
        Pal.aurant     Pseudoalteromonas aurantia
        Pal.carrag     Pseudoalteromonas carrageenovora
        Pal.citrea     Pseudoalteromonas citrea
        Pal.denitr     Pseudoalteromonas denitrificans
        Pal.espeji     Pseudoalteromonas espejiana
        Pal.haltet     Pseudoalteromonas haloplanktis
        Pal.luteov     Pseudoalteromonas luteoviolacea
        Pal.nigrif     Pseudoalteromonas nigrifaciens
        Pal.piscic     Pseudoalteromonas piscicida
        Pal.rubra      Pseudoalteromonas rubra
        Pal.undina     Pseudoalteromonas undina
        Par.solven     Paracoccus solventivorans
        Pas.BTax15     Pasteurella sp.
        Pas.BTax18     Pasteurella sp.
        Pas.BTax20     Pasteurella sp.
        Pas.haemo2     Pasteurella haemolytica
        Pas.haemo3     Pasteurella haemolytica
        Pas.haemo4     Pasteurella haemolytica
        Pas.haemo5     Pasteurella haemolytica
        Pas.haemo6     Pasteurella haemolytica
        Pas.haemo7     Pasteurella haemolytica
        Pas.haemo8     Pasteurella haemolytica
        Pas.treha2     Pasteurella trehalosi
        Pas.treha3     Pasteurella trehalosi
        Pas.trehal     Pasteurella trehalosi
        Pbs.longsp     Planobispora longispora
        Pc.horiksh     Pyrococcus horikoshii
        Pc.sp2         Pyrococcus sp.
        Pdmb.ameri     Pedomicrobium americanum
        Pdmb.austr     Pedomicrobium australicum
        Pdmb.ferrg     Pedomicrobium ferrugineum
        Pdmb.mangn     Pedomicrobium manganicum
        Peb.acidgl     Pelobacter acidigallici
        Peb.veneti     Pelobacter venetianus
        Pht.sp1        Phytoplasma sp.
        Pht.spPho2     Phytoplasma sp.
        Pht.spPhor     Phytoplasma sp.
        Pld.clathr     Pelodictyon clathratiforme
        Pld.luteol     Pelodictyon luteolum
        Pld.phclth     Pelodictyon phaeoclathratiforme
        Plm.anulat     Pilimelia anulata
        Plm.terev2     Pilimelia terevasa
        Plm.tereva     Pilimelia terevasa
        Plrc.7516      Pleurocapsa sp.
        Pms.paront     Planomonospora parontospora
        Ppb.neust2     Porphyrobacter neustonensis
        Ppb.tepida     Porphyrobacter tepidarius
        Pph.oshima     Picrophilus oshimae
        Pps.9succ1     Peptostreptococcus sp.
        Pps.anaer5     Peptostreptococcus anaerobius
        Prg.maris      Propionigenium maris
        Prm.citrea     Promicromonospora citrea
        Prm.entphl     Promicromonospora enterophila
        Prv.dental     Prevotella dentalis
        Ps.CRE11       Pseudomonas sp.
        Ps.CRE12       Pseudomonas sp.
        Ps.aerugi4     Pseudomonas aeruginosa
        Ps.agarici     Pseudomonas agarici
        Ps.alcalig     Pseudomonas alcaligenes
        Ps.amygdal     Pseudomonas amygdali
        Ps.aureofa     Pseudomonas aureofaciens
        Ps.azotofo     Pseudomonas azotoformans
        Ps.caripap     Pseudomonas caricapapayae
        Ps.chlraph     Pseudomonas chlororaphis
        Ps.corruga     Pseudomonas corrugata
        Ps.fluore6     Pseudomonas fluorescens
        Ps.fragi1      Pseudomonas fragi
        Ps.fulva1      Pseudomonas fulva
        Ps.lemoign     Pseudomonas lemoignei
        Ps.luteola     Pseudomonas luteola
        Ps.mendoc6     Pseudomonas mendocina
        Ps.mucidol     Pseudomonas mucidolens
        Ps.nitrred     Pseudomonas nitroreducens
        Ps.oleovor     Pseudomonas oleovorans
        Ps.putida6     Pseudomonas putida
        Ps.putida7     Pseudomonas putida
        Ps.sp2         Pseudomonas sp.
        Ps.spBB49      Pseudomonas sp.
        Ps.spBB61      Pseudomonas sp.
        Ps.spS126      Pseudomonas sp.
        Ps.spS152      Pseudomonas sp.
        Ps.spS1_1      Pseudomonas sp.
        Ps.spS1_3      Pseudomonas sp.
        Ps.spS1_6      Pseudomonas sp.
        Ps.spS2_1      Pseudomonas sp.
        Ps.spS2_5      Pseudomonas sp.
        Ps.spS329      Pseudomonas sp.
        Ps.spS3_1      Pseudomonas sp.
        Ps.spS3_3      Pseudomonas sp.
        Ps.spS3_6      Pseudomonas sp.
        Ps.spS3_8      Pseudomonas sp.
        Ps.spS3_9      Pseudomonas sp.
        Ps.stramin     Pseudomonas straminea
        Ps.stutz12     Pseudomonas stutzeri
        Ps.synxant     Pseudomonas synxantha
        Ps.syring5     Pseudomonas syringae
        Ps.taetrol     Pseudomonas taetrolens
        Ps.tolaasi     Pseudomonas tolaasii
        Psil.nud_C     Psilotum nudum -- chloroplast
        Psy.immobl     Psychrobacter immobilis
        Pv.ruminis     Pseudobutyrivibrio ruminis
        Pyr.abyssi     Pyrodictium abyssi
        Pyrm.par_C     Pyramimonas parkeae -- chloroplast
        R.rubrum4      Rhodospirillum rubrum
        Ral.eutro4     Ralstonia eutropha
        Ral.sola29     Ralstonia solanacearum
        Rb.azofrm2     Rhodobacter azotoformans
        Rb.azofrmn     Rhodobacter azotoformans
        Rbb.radto2     Rubrobacter radiotolerans
        Rbb.radtol     Rubrobacter radiotolerans
        Rbb.xylano     Rubrobacter xylanophilus
        Rco.GH557      Rhodococcus sp.
        Rco.coprp2     Rhodococcus coprophilus
        Rco.eryth3     Rhodococcus erythropolis
        Rco.eryth5     Rhodococcus erythropolis
        Rco.fasci3     Rhodococcus fascians
        Rco.fasci4     Rhodococcus fascians
        Rco.globe3     Rhodococcus globerulus
        Rco.globe4     Rhodococcus globerulus
        Rco.marna2     Rhodococcus marinonascens
        Rco.marnas     Rhodococcus marinonascens
        Rco.opacu3     Rhodococcus opacus
        Rco.rhodn4     Rhodococcus rhodnii
        Rco.rhodo3     Rhodococcus rhodochrous
        Rco.rhodo4     Rhodococcus rhodochrous
        Rco.sp33       Rhodococcus sp.
        Rco.sp8        Rhodococcus sp.
        Rco.spM5       Rhodococcus sp.
        Rco.zopfii     Rhodococcus zopfii
        Rhb.1079_2     Rhizobium sp.
        Rhb.1115_2     Rhizobium sp.
        Rhb.2m16_4     Rhizobium sp.
        Rhb._19351     Rhizobium sp.
        Rhb._JL084     Rhizobium sp.
        Rhb._JL103     Rhizobium sp.
        Rhb._NM095     Rhizobium sp.
        Rhb.cc2155     Rhizobium sp.
        Rhb.cc2160     Rhizobium sp.
        Rhb.legu14     Rhizobium leguminosarum
        Rhb.legu15     Rhizobium leguminosarum
        Rhb.legu16     Rhizobium leguminosarum
        Rhb.medter     Rhizobium mediterraneum
        Rhb.sp0218     Rhizobium sp.
        Rhb.sp1079     Rhizobium sp.
        Rhb.sp1083     Rhizobium sp.
        Rhb.sp1088     Rhizobium sp.
        Rhb.sp1114     Rhizobium sp.
        Rhb.sp1125     Rhizobium sp.
        Rhb.sp1141     Rhizobium sp.
        Rhb.sp1146     Rhizobium sp.
        Rhb.sp1177     Rhizobium sp.
        Rhb.sp1416     Rhizobium sp.
        Rhb.sp1968     Rhizobium sp.
        Rhb.sp1970     Rhizobium sp.
        Rhb.sp2026     Rhizobium sp.
        Rhb.sp2061     Rhizobium sp.
        Rhb.sp2163     Rhizobium sp.
        Rhb.sp2209     Rhizobium sp.
        Rhb.sp2223     Rhizobium sp.
        Rhb.sp2235     Rhizobium sp.
        Rhb.sp2370     Rhizobium sp.
        Rhb.sp2386     Rhizobium sp.
        Rhb.sp3143     Rhizobium sp.
        Rhb.sp3353     Rhizobium sp.
        Rhb.sp3357     Rhizobium sp.
        Rhb.sp3394     Rhizobium sp.
        Rhb.sp3466     Rhizobium sp.
        Rhb.sp3620     Rhizobium sp.
        Rhb.sp3854     Rhizobium sp.
        Rhb.sp4540     Rhizobium sp.
        Rhb.sp7104     Rhizobium sp.
        Rhb.spSIN1     Rhizobium sp.
        Rhb.sp_490     Rhizobium sp.
        Rhb.sp_540     Rhizobium sp.
        Rhb.sp_H4      Rhizobium sp.
        Rhb.sp_TM1     Rhizobium sp.
        Rhb.tropi9     Rhizobium tropici
        Rhf.limosa     Rhodoferax limosa
        Rht.obamae     Rhodothermus obamae
        Ric.aeschl     Rickettsia aeschlimanni
        Ric.peacck     Rickettsia peacockii
        Ric.spPAR      Rickettsia sp.
        Rps.palu10     Rhodopseudomonas palustris
        Rps.palus8     Rhodopseudomonas palustris
        Rps.palus9     Rhodopseudomonas palustris
        Ruc.albus      Ruminococcus albus
        Ruc.bromii     Ruminococcus bromii
        Ruc.callid     Ruminococcus callidus
        Ruc.obeum      Ruminococcus obeum
        S.cholera2     Salmonella choleraesuis
        S.enterit3     Salmonella enteritidis
        S.give         Salmonella give
        S.shomron      Salmonella shomron
        S.sofia        Salmonella sofia
        S.sp9712       Salmonella sp.
        S.tymurium     Salmonella typhimurium
        Sag.stllat     Sagittula stellata
        Sb.termiti     Sporobacter termitidis
        Sc.roseus      Salinicoccus roseus
        Scw.succin     Schwartzia succinivorans
        Sfb.dislfx     Sulfobacillus disulfidooxidans
        Sfb.tsoxi2     Sulfobacillus thermosulfidooxidans
        Sgb.suarez     Sanguibacter suarezii
        She.benthi     Shewanella benthica
        She.haneda     Shewanella hanedai
        She.putre3     Shewanella putrefaciens
        She.sp122      Shewanella sp.
        Shi.dysnt2     Shigella dysenteriae
        Shi.dysntr     Shigella dysenteriae
        Shi.flxner     Shigella flexneri
        Shi.sonnei     Shigella sonnei
        Sklt.cos_C     Skeletonema costatum -- chloroplast
        Sklt.pco_C     Skeletonema pseudocostatum -- chloroplast
        Sl.azoricu     Stygiolobus azoricus
        Slgn.apo_C     Selaginella apoda -- chloroplast
        Slm.fluora     Solomonas fluorantheni
        Sncy.6803A     Synechocystis sp.
        Sncy.6803B     Synechocystis sp.
        Sp.yamansh     Spirilliplanes yamanashiensis
        Spg.DhA_33     Sphingomonas sp.
        Spg.UN1F1      Sphingomonas sp.
        Spg.UN1F2      Sphingomonas sp.
        Spg.UN1P1      Sphingomonas sp.
        Spg.chlor2     Sphingomonas chlorophenolica
        Spg.chloro     Sphingomonas chlorophenolica
        Spg.flava2     Sphingomonas flava
        Spg.flava      Sphingomonas flava
        Spg.pauci7     Sphingomonas paucimobilis
        Spg.pauci8     Sphingomonas paucimobilis
        Spg.pauci9     Sphingomonas paucimobilis
        Spg.spA175     Sphingomonas sp.
        Spg.spB1       Sphingomonas sp.
        Spg.spBN6      Sphingomonas sp.
        Spg.spCFO6     Sphingomonas sp.
        Spg.spHH69     Sphingomonas sp.
        Spg.spQ1       Sphingomonas sp.
        Spg.spSS3      Sphingomonas sp.
        Spg.subar2     Sphingomonas subarctica
        Spg.subar3     Sphingomonas subarctica
        Spg.subarc     Sphingomonas subarctica
        Spg.truepr     Sphingomonas trueperi
        Spg.yanoi8     Sphingomonas yanoikuyae
        Spg.yanoi9     Sphingomonas yanoikuyae
        Spgn.pal_C     Sphagnum palustre -- chloroplast
        Spgy.max_C     Spirogyra maxima -- chloroplast
        Sph.mulvo2     Sphingobacterium multivorum
        Sph.mulvor     Sphingobacterium multivorum
        Sph.sprvor     Sphingobacterium spiritivorum
        Sph.thalp2     Sphingobacterium thalpophilum
        Sph.thalp3     Sphingobacterium thalpophilum
        Spi.spNL1      Spirochaeta sp.
        Spm.silvac     Sporomusa silvacetica
        Srh.sp1392     Sinorhizobium sp.
        Srh.sp1393     Sinorhizobium sp.
        Srh.sp1395     Sinorhizobium sp.
        Srh.sp1492     Sinorhizobium sp.
        Srh.sp1496     Sinorhizobium sp.
        Srh.sp1551     Sinorhizobium sp.
        Srh.sp1624     Sinorhizobium sp.
        Srh.sp1698     Sinorhizobium sp.
        Stc.angin7     Streptococcus anginosus
        Stc.angin8     Streptococcus anginosus
        Stc.angin9     Streptococcus anginosus
        Stc.mille3     Streptococcus milleri
        Stc.uberis     Streptococcus uberis
        Ste.africa     Stenotrophomonas africae
        Sth.marinu     Staphylothermus marinus
        Stm.acidsc     Streptomyces acidiscabies
        Stm.albflv     Streptomyces albidoflavus
        Stm.bluens     Streptomyces bluensis
        Stm.bottre     Streptomyces bottropensis
        Stm.canesc     Streptomyces canescens
        Stm.coeli4     Streptomyces coelicolor
        Stm.diast2     Streptomyces diastatochromogenes
        Stm.euryth     Streptomyces eurythermus
        Stm.felleu     Streptomyces felleus
        Stm.galbu2     Streptomyces galbus
        Stm.glauce     Streptomyces glaucescens
        Stm.gouger     Streptomyces gougerotii
        Stm.hyscop     Streptomyces hygroscopicus
        Stm.intmed     Streptomyces intermedius
        Stm.limosu     Streptomyces limosus
        Stm.lincln     Streptomyces lincolnensis
        Stm.macspr     Streptomyces macrosporus
        Stm.mashue     Streptomyces mashuensis
        Stm.megspr     Streptomyces megasporus
        Stm.neygaw     Streptomyces neyagawaensis
        Stm.odorif     Streptomyces odorifer
        Stm.rutger     Streptomyces rutgersensis
        Stm.samps2     Streptomyces sampsonii
        Stm.sampsn     Streptomyces sampsonii
        Stm.scabi2     Streptomyces scabies
        Stm.scabi3     Streptomyces scabies
        Stm.scabie     Streptomyces scabies
        Stm.setoni     Streptomyces setonii
        Stm.sp5        Streptomyces sp.
        Stm.thdias     Streptomyces thermodiastaticus
        Stm.thline     Streptomyces thermolineatus
        Stm.thnitr     Streptomyces thermonitrificans
        Stm.thvio2     Streptomyces thermoviolaceus
        Stm.thviol     Streptomyces thermoviolaceus
        Stm.thvulg     Streptomyces thermovulgaris
        Stm.tnedae     Streptomyces tendae
        Stp.epide6     Staphylococcus epidermidis
        Stp.epide7     Staphylococcus epidermidis
        Sts.43137      Streptosporangium sp.
        Sts.album      Streptosporangium album
        Sts.ameth2     Streptosporangium amethystogenes
        Sts.amethy     Streptosporangium amethystogenes
        Sts.brasil     Streptosporangium "brasiliense"
        Sts.carneu     Streptosporangium carneum
        Sts.cinnab     Streptosporangium "cinnabarium"
        Sts.clavif     Streptosporangium claviforme
        Sts.corru2     Streptosporangium corrugatum
        Sts.corru3     Streptosporangium corrugatum
        Sts.corrug     Streptosporangium corrugatum
        Sts.fragi2     Streptosporangium fragile
        Sts.fragil     Streptosporangium fragile
        Sts.korean     Streptosporangium "koreanum"
        Sts.longs2     Streptosporangium longisporum
        Sts.longsp     Streptosporangium longisporum
        Sts.nondi2     Streptosporangium nondiastaticum
        Sts.nondi3     Streptosporangium nondiastaticum
        Sts.pvulg2     Streptosporangium pseudovulgare
        Sts.pvulg3     Streptosporangium pseudovulgare
        Sts.pvulgr     Streptosporangium pseudovulgare
        Sts.roseu2     Streptosporangium roseum
        Sts.roseu3     Streptosporangium roseum
        Sts.roseu4     Streptosporangium roseum
        Sts.roseu5     Streptosporangium roseum
        Sts.rubrum     Streptosporangium "rubrum"
        Sts.viola2     Streptosporangium violaceochromogenes
        Sts.viola3     Streptosporangium violaceochromogenes
        Sts.violac     Streptosporangium violaceochromogenes
        Sts.viral2     Streptosporangium viridialbum
        Sts.viral3     Streptosporangium viridialbum
        Sts.viralb     Streptosporangium viridialbum
        Sts.vulga2     Streptosporangium vulgare
        Sts.vulga3     Streptosporangium vulgare
        Sts.vulga4     Streptosporangium vulgare
        Sts.vulgar     Streptosporangium vulgare
        Stt.muclag     Stomatococcus mucilaginosus
        Sul.acald3     Sulfolobus acidocaldarius
        Sul.acald4     Sulfolobus acidocaldarius
        Sul.hakons     Sulfolobus hakonensis
        Sul.metall     Sulfolobus metallicus
        Sul.solfa4     Sulfolobus solfataricus
        Sul.solfa5     Sulfolobus solfataricus
        Sul.solfa6     Sulfolobus solfataricus
        Sul.spB6       Sulfolobus sp.
        Sul.spLM       Sulfolobus sp.
        Sul.thurng     Sulfolobus "thuringiensis"
        Syp.glycol     Syntrophobotulus glycolicus
        Tab.wiegel     Thermoanaerobacter wiegelii
        Tat.macea2     Tatlockia maceachernii
        Tbm.aotear     Thermoanaerobacterium aotearoense
        Tc.fumicol     Thermococcus fumicolans
        Tc.peptph3     Thermococcus peptonophilus
        Tc.profun2     Thermococcus profundus
        Thb.thsulf     Thiobacillus thermosulfatus
        Thpl.arauc     Thioploca araucae
        Thpl.chile     Thioploca chileae
        Thpl.ingri     Thioploca ingrica
        Thtx.nive2     Thiothrix nivea
        Tmb.celer1     Thermobrachium celer
        Tmms.curva     Thermomonospora curvata
        Tms.sp2        Thiomicrospira sp.
        Tmsp.obl_C     Tmesipteris oblanceolata -- chloroplast
        Tph.whipp2     Tropheryma whippelii
        Trb.tumes2     Terrabacter tumescens
        Trd.sp1067     Trichodesmium sp.
        Trp.maltop     Treponema maltophilum
        Trp.medium     Treponema medium
        Tsu.pauro6     Tsukamurella paurometabolum
        Tsu.pulmon     Tsukamurella pulmonis
        Tsu.wrtslv     Tsukamurella wratislaviensis
        Tsy.liplyt     Thermosyntropha lipolytica
        Ttr.ferred     Thermoterrabacterium ferrireducens
        Upl.cangen     Ureaplasma canigenitalium
        Upl.cati       Ureaplasma cati
        Upl.divers     Ureaplasma diversum
        Upl.felinu     Ureaplasma felinum
        Upl.gallor     Ureaplasma gallorale
        V.choler14     Vibrio cholerae
        V.scophtha     Vibrio scophthalmi
        V.spDB172F     Vibrio sp.
        V.spDB172R     Vibrio sp.
        Wg.glossin     Wigglesworthia glossinidia
        Wlb.pipie8     Wolbachia pipientis
        Wlb.pipie9     Wolbachia pipientis
        Wlb.sp81       Wolbachia sp.
        Wlb.sp85       Wolbachia sp.
        Wlb.sp89       Wolbachia sp.
        Wlb.spAph2     Wolbachia sp.
        Wlb.spAphy     Wolbachia sp.
        Wlb.spLaod     Wolbachia sp.
        Wlb.spPorc     Wolbachia sp.
        Wlb.spTrib     Wolbachia sp.
        Wlb.spTric     Wolbachia sp.
        Xan.albiln     Xanthomonas albilineans
        Xan.arbori     Xanthomonas arboricola
        Xan.axonop     Xanthomonas axonopodis
        Xan.bromi1     Xanthomonas bromi
        Xan.campe7     Xanthomonas campestris
        Xan.cassav     Xanthomonas cassavae
        Xan.codiae     Xanthomonas codiaei
        Xan.cucurb     Xanthomonas cucurbitae
        Xan.fraga2     Xanthomonas fragariae
        Xan.hortor     Xanthomonas hortorum
        Xan.hyacin     Xanthomonas hyacinthi
        Xan.meloni     Xanthomonas melonis
        Xan.oryza2     Xanthomonas oryzae
        Xan.pisi1      Xanthomonas pisi
        Xan.populi     Xanthomonas populi
        Xan.saccha     Xanthomonas sacchari
        Xan.theico     Xanthomonas theicola
        Xan.vasico     Xanthomonas vasicola
        Xan.vesitr     Xanthomonas vesicatoria
        Xtb.agilis     Xanthobacter agilis
        Xtb.autrph     Xanthobacter autotrophicus
        Xtb.flavus     Xanthobacter flavus
        Xtb.tageti     Xanthobacter tagetidis
        Yamg.uni_C     Yamagishiella unicocca -- chloroplast
        Yer.YEM11A     Yersinia sp.
        Yer.YEM17B     Yersinia sp.
        Yer.enter2     Yersinia enterocolitica
        Yer.enter3     Yersinia enterocolitica
        Yer.enter4     Yersinia enterocolitica
        Yer.enter5     Yersinia enterocolitica
        Yer.enter6     Yersinia enterocolitica
        Yer.enter7     Yersinia enterocolitica
        Yer.enter8     Yersinia enterocolitica
        Zea_may5_C     Zea mays -- chloroplast
        Zea_may6_C     Zea mays -- chloroplast
        Zoo.DhA_35     Zoogloea sp.
        env.10a        environmental sample
        env.1111       environmental sample
        env.11a        environmental sample
        env.11w103     environmental sample
        env.12a        environmental sample
        env.1411       environmental sample
        env.14a        environmental sample
        env.1611       environmental sample
        env.16a        environmental sample
        env.17a        environmental sample
        env.1911       environmental sample
        env.19a        environmental sample
        env.22a        environmental sample
        env.26a        environmental sample
        env.3011       environmental sample
        env.311        environmental sample
        env.3311       environmental sample
        env.33a        environmental sample
        env.34a        environmental sample
        env.35a        environmental sample
        env.3611       environmental sample
        env.3711       environmental sample
        env.37SW1      environmental sample
        env.37SW2      environmental sample
        env.37a        environmental sample
        env.3811       environmental sample
        env.3911       environmental sample
        env.42a        environmental sample
        env.4511       environmental sample
        env.4611       environmental sample
        env.4711       environmental sample
        env.47a        environmental sample
        env.4811       environmental sample
        env.4911       environmental sample
        env.4B7        environmental sample
        env.4a         environmental sample
        env.5011       environmental sample
        env.5111       environmental sample
        env.5211       environmental sample
        env.52a        environmental sample
        env.5411       environmental sample
        env.54a        environmental sample
        env.5511       environmental sample
        env.5811       environmental sample
        env.5911       environmental sample
        env.6511       environmental sample
        env.6711       environmental sample
        env.6811       environmental sample
        env.6911       environmental sample
        env.7011       environmental sample
        env.7911       environmental sample
        env.811        environmental sample
        env.8511       environmental sample
        env.8911       environmental sample
        env.8a         environmental sample
        env.911        environmental sample
        env.A10h       environmental sample
        env.A11jk      environmental sample
        env.A12s       environmental sample
        env.A13k       environmental sample
        env.A14jsn     environmental sample
        env.A15jk      environmental sample
        env.A16jk      environmental sample
        env.A17o       environmental sample
        env.A18p       environmental sample
        env.A1ghqi     environmental sample
        env.A20n       environmental sample
        env.A21n       environmental sample
        env.A22L       environmental sample
        env.A23j       environmental sample
        env.A24otp     environmental sample
        env.A25t       environmental sample
        env.A26ou      environmental sample
        env.A27u       environmental sample
        env.A28t       environmental sample
        env.A29mn      environmental sample
        env.A2g        environmental sample
        env.A30P       environmental sample
        env.A31m       environmental sample
        env.A32L       environmental sample
        env.A34o       environmental sample
        env.A36o       environmental sample
        env.A37t       environmental sample
        env.A38t       environmental sample
        env.A39s       environmental sample
        env.A3g        environmental sample
        env.A40t       environmental sample
        env.A41u       environmental sample
        env.A42L       environmental sample
        env.A43L       environmental sample
        env.A44t       environmental sample
        env.A45L       environmental sample
        env.A46L       environmental sample
        env.A47t       environmental sample
        env.A48u       environmental sample
        env.A49u       environmental sample
        env.A4o        environmental sample
        env.A50u       environmental sample
        env.A51p       environmental sample
        env.A52p       environmental sample
        env.A53n       environmental sample
        env.A55n       environmental sample
        env.A56n       environmental sample
        env.A57n       environmental sample
        env.A58L       environmental sample
        env.A59p       environmental sample
        env.A5g        environmental sample
        env.A62L       environmental sample
        env.A6hq       environmental sample
        env.A7hq       environmental sample
        env.A8h        environmental sample
        env.A9h        environmental sample
        env.AEM1       environmental sample
        env.AEM2       environmental sample
        env.AEM3       environmental sample
        env.AEM4       environmental sample
        env.AEM5       environmental sample
        env.AEM6       environmental sample
        env.AW5        environmental sample
        env.Aspo1      environmental sample
        env.Aspo2      environmental sample
        env.Aspo3      environmental sample
        env.Aspo4      environmental sample
        env.Aspo5      environmental sample
        env.CS105      environmental sample
        env.CS106      environmental sample
        env.CS408      environmental sample
        env.CS93       environmental sample
        env.CS981      environmental sample
        env.FJ21A      environmental sample
        env.G10        environmental sample
        env.G11        environmental sample
        env.G12        environmental sample
        env.G13        environmental sample
        env.G14        environmental sample
        env.G15        environmental sample
        env.G16        environmental sample
        env.G17        environmental sample
        env.G18        environmental sample
        env.G19        environmental sample
        env.G1         environmental sample
        env.G20        environmental sample
        env.G21        environmental sample
        env.G22        environmental sample
        env.G23        environmental sample
        env.G24        environmental sample
        env.G25        environmental sample
        env.G26        environmental sample
        env.G27        environmental sample
        env.G28        environmental sample
        env.G29        environmental sample
        env.G2         environmental sample
        env.G30        environmental sample
        env.G31        environmental sample
        env.G32        environmental sample
        env.G33        environmental sample
        env.G34        environmental sample
        env.G35        environmental sample
        env.G36        environmental sample
        env.G37        environmental sample
        env.G38        environmental sample
        env.G39        environmental sample
        env.G3         environmental sample
        env.G40        environmental sample
        env.G42        environmental sample
        env.G43        environmental sample
        env.G44        environmental sample
        env.G4         environmental sample
        env.G5         environmental sample
        env.G6         environmental sample
        env.G7         environmental sample
        env.G8         environmental sample
        env.G9         environmental sample
        env.GAC1       environmental sample
        env.GAC2       environmental sample
        env.GAC3       environmental sample
        env.GAC5       environmental sample
        env.GAC8       environmental sample
        env.GAI15      environmental sample
        env.GAI21      environmental sample
        env.GAI26      environmental sample
        env.GAI33      environmental sample
        env.GAI36      environmental sample
        env.GAI37      environmental sample
        env.GAI3b      environmental sample
        env.GAI5       environmental sample
        env.JA21gh     environmental sample
        env.JA22hi     environmental sample
        env.JA23h      environmental sample
        env.JN10c      environmental sample
        env.JN11de     environmental sample
        env.JN15d      environmental sample
        env.JN16e      environmental sample
        env.JN17e      environmental sample
        env.JN18e      environmental sample
        env.JN1af      environmental sample
        env.JN2c       environmental sample
        env.JN3c       environmental sample
        env.JN5bf      environmental sample
        env.JN6b       environmental sample
        env.JN7b       environmental sample
        env.JN8c       environmental sample
        env.JN9c       environmental sample
        env.K10        environmental sample
        env.K11        environmental sample
        env.K12        environmental sample
        env.K13        environmental sample
        env.K15        environmental sample
        env.K18        environmental sample
        env.K19        environmental sample
        env.K1         environmental sample
        env.K2         environmental sample
        env.K3         environmental sample
        env.K4         environmental sample
        env.K5         environmental sample
        env.K6         environmental sample
        env.K8         environmental sample
        env.K9         environmental sample
        env.MC12       environmental sample
        env.MC23       environmental sample
        env.MC2        environmental sample
        env.MC34       environmental sample
        env.MC5        environmental sample
        env.MC6        environmental sample
        env.MC7        environmental sample
        env.MP17       environmental sample
        env.OCS307     environmental sample
        env.OM13       environmental sample
        env.OM19       environmental sample
        env.OM20       environmental sample
        env.OM21       environmental sample
        env.OM22       environmental sample
        env.PAN031     environmental sample
        env.R2102      environmental sample
        env.SAR116     environmental sample
        env.SAR121     environmental sample
        env.SAR122     environmental sample
        env.SAR125     environmental sample
        env.SAR134     environmental sample
        env.SAR135     environmental sample
        env.SAR145     environmental sample
        env.SAR156     environmental sample
        env.SAR160     environmental sample
        env.SAR166     environmental sample
        env.SAR202     environmental sample
        env.SAR307     environmental sample
        env.SAR406     environmental sample
        env.SAR86      environmental sample
        env.SAR89      environmental sample
        env.T5811      environmental sample
        env.TB12       environmental sample
        env.TB24       environmental sample
        env.UN100      environmental sample
        env.UN104      environmental sample
        env.UN105      environmental sample
        env.UN106      environmental sample
        env.UN108      environmental sample
        env.UN109      environmental sample
        env.UN110      environmental sample
        env.UN114      environmental sample
        env.UN116      environmental sample
        env.UN117      environmental sample
        env.UN119      environmental sample
        env.cOS17      environmental sample
        env.cOS1       environmental sample
        env.cOS4       environmental sample
        env.cOS62      environmental sample
        env.cOS6       environmental sample
        env.cOS77      environmental sample
        env.cOS7       environmental sample
        env.ogram1     environmental sample
        env.pCON11     environmental sample
        env.pCON12     environmental sample
        env.pCON14     environmental sample
        env.pCON17     environmental sample
        env.pCON19     environmental sample
        env.pCON26     environmental sample
        env.pCON47     environmental sample
        env.pCON4      environmental sample
        env.pCON7      environmental sample
        env.pM10       environmental sample
        env.pX1        environmental sample
        env.pY3        environmental sample
        env.picL       environmental sample
        env.picNb      environmental sample
        env.spUN10     environmental sample
        env.spUN11     environmental sample
        env.spUN15     environmental sample
        env.spUN16     environmental sample
        env.spUN17     environmental sample
        env.spUN19     environmental sample
        env.spUN1      environmental sample
        env.spUN21     environmental sample
        env.spUN24     environmental sample
        env.spUN26     environmental sample
        env.spUN27     environmental sample
        env.spUN28     environmental sample
        env.spUN2      environmental sample
        env.spUN30     environmental sample
        env.spUN34     environmental sample
        env.spUN36     environmental sample
        env.spUN38     environmental sample
        env.spUN39     environmental sample
        env.spUN40     environmental sample
        env.spUN43     environmental sample
        env.spUN45     environmental sample
        env.spUN47     environmental sample
        env.spUN48     environmental sample
        env.spUN50     environmental sample
        env.spUN55     environmental sample
        env.spUN59     environmental sample
        env.spUN5      environmental sample
        env.spUN62     environmental sample
        env.spUN64     environmental sample
        env.spUN68     environmental sample
        env.spUN6      environmental sample
        env.spUN71     environmental sample
        env.spUN75     environmental sample
        env.spUN77     environmental sample
        env.spUN78     environmental sample
        env.spUN79     environmental sample
        env.spUN81     environmental sample
        env.spUN82     environmental sample
        env.spUN84     environmental sample
        env.spUN85     environmental sample
        env.spUN90     environmental sample
        env.spUN92     environmental sample
        env.spUN93     environmental sample
        env.spUN96     environmental sample
        str.1001       unnamed bacterium
        str.1002       unnamed bacterium
        str.1003       unnamed bacterium
        str.1005       unnamed bacterium
        str.1008       unnamed bacterium
        str.1009       unnamed bacterium
        str.1010       unnamed bacterium
        str.1011       unnamed bacterium
        str.1014       unnamed bacterium
        str.1015       unnamed bacterium
        str.1017       unnamed bacterium
        str.1018       unnamed bacterium
        str.1019       unnamed bacterium
        str.1020       unnamed bacterium
        str.1021       unnamed bacterium
        str.1022       unnamed bacterium
        str.1023       unnamed bacterium
        str.1024       unnamed bacterium
        str.1025       unnamed bacterium
        str.1026       unnamed bacterium
        str.1027       unnamed bacterium
        str.1029       unnamed bacterium
        str.1030       unnamed bacterium
        str.1031       unnamed bacterium
        str.1033       unnamed bacterium
        str.1034       unnamed bacterium
        str.1035       unnamed bacterium
        str.1036       unnamed bacterium
        str.1037       unnamed bacterium
        str.1038       unnamed bacterium
        str.1039       unnamed bacterium
        str.1041       unnamed bacterium
        str.1044       unnamed bacterium
        str.1045       unnamed bacterium
        str.1053       unnamed bacterium
        str.1055       unnamed bacterium
        str.1056       unnamed bacterium
        str.1058       unnamed bacterium
        str.1060       unnamed bacterium
        str.1061       unnamed bacterium
        str.1063       unnamed bacterium
        str.1064       unnamed bacterium
        str.1065       unnamed bacterium
        str.1068       unnamed bacterium
        str.1070       unnamed bacterium
        str.1072       unnamed bacterium
        str.1073       unnamed bacterium
        str.1074       unnamed bacterium
        str.1075       unnamed bacterium
        str.1076       unnamed bacterium
        str.1077       unnamed bacterium
        str.1079       unnamed bacterium
        str.1080       unnamed bacterium
        str.1082       unnamed bacterium
        str.1084       unnamed bacterium
        str.1085       unnamed bacterium
        str.1087       unnamed bacterium
        str.1090       unnamed bacterium
        str.1091       unnamed bacterium
        str.1093       unnamed bacterium
        str.1094       unnamed bacterium
        str.1095       unnamed bacterium
        str.1096       unnamed bacterium
        str.1097       unnamed bacterium
        str.1098       unnamed bacterium
        str.1099       unnamed bacterium
        str.10_40      unnamed bacterium
        str.1100       unnamed bacterium
        str.1103       unnamed bacterium
        str.1104       unnamed bacterium
        str.1105       unnamed bacterium
        str.1106       unnamed bacterium
        str.1108       unnamed bacterium
        str.1109       unnamed bacterium
        str.1110       unnamed bacterium
        str.1111       unnamed bacterium
        str.1112       unnamed bacterium
        str.1113       unnamed bacterium
        str.1114       unnamed bacterium
        str.1115       unnamed bacterium
        str.1117       unnamed bacterium
        str.1118       unnamed bacterium
        str.1119       unnamed bacterium
        str.1120       unnamed bacterium
        str.14331      unnamed bacterium
        str.16SX-1     unnamed bacterium
        str.16SX-2     unnamed bacterium
        str.2001       unnamed bacterium
        str.2002       unnamed bacterium
        str.2003       unnamed bacterium
        str.2004       unnamed bacterium
        str.2005       unnamed bacterium
        str.2006       unnamed bacterium
        str.2007       unnamed bacterium
        str.2008       unnamed bacterium
        str.2010       unnamed bacterium
        str.2011       unnamed bacterium
        str.2012       unnamed bacterium
        str.2013       unnamed bacterium
        str.2014       unnamed bacterium
        str.2015       unnamed bacterium
        str.2016       unnamed bacterium
        str.2017       unnamed bacterium
        str.2018       unnamed bacterium
        str.2020       unnamed bacterium
        str.2021       unnamed bacterium
        str.2022       unnamed bacterium
        str.2024       unnamed bacterium
        str.2025       unnamed bacterium
        str.2026       unnamed bacterium
        str.2027       unnamed bacterium
        str.2030       unnamed bacterium
        str.2032       unnamed bacterium
        str.2033       unnamed bacterium
        str.2034       unnamed bacterium
        str.2035       unnamed bacterium
        str.2036       unnamed bacterium
        str.2037       unnamed bacterium
        str.2038       unnamed bacterium
        str.2039       unnamed bacterium
        str.2040       unnamed bacterium
        str.2041       unnamed bacterium
        str.2042       unnamed bacterium
        str.2044       unnamed bacterium
        str.2045       unnamed bacterium
        str.2046       unnamed bacterium
        str.2048       unnamed bacterium
        str.2050       unnamed bacterium
        str.2051       unnamed bacterium
        str.2052       unnamed bacterium
        str.2053       unnamed bacterium
        str.2054       unnamed bacterium
        str.2056       unnamed bacterium
        str.2058       unnamed bacterium
        str.2059       unnamed bacterium
        str.2061       unnamed bacterium
        str.2062       unnamed bacterium
        str.2063       unnamed bacterium
        str.2065       unnamed bacterium
        str.2067       unnamed bacterium
        str.2068       unnamed bacterium
        str.2070       unnamed bacterium
        str.2071       unnamed bacterium
        str.2072       unnamed bacterium
        str.2073       unnamed bacterium
        str.2075       unnamed bacterium
        str.2076       unnamed bacterium
        str.2077       unnamed bacterium
        str.2078       unnamed bacterium
        str.2080       unnamed bacterium
        str.2082       unnamed bacterium
        str.2083       unnamed bacterium
        str.2084       unnamed bacterium
        str.2085       unnamed bacterium
        str.2086       unnamed bacterium
        str.2087       unnamed bacterium
        str.2088       unnamed bacterium
        str.2089       unnamed bacterium
        str.2090       unnamed bacterium
        str.2091       unnamed bacterium
        str.2092       unnamed bacterium
        str.2093       unnamed bacterium
        str.2094       unnamed bacterium
        str.2095       unnamed bacterium
        str.2098       unnamed bacterium
        str.2099       unnamed bacterium
        str.2100       unnamed bacterium
        str.2101       unnamed bacterium
        str.2102       unnamed bacterium
        str.2106       unnamed bacterium
        str.2107       unnamed bacterium
        str.2108       unnamed bacterium
        str.2111       unnamed bacterium
        str.2112       unnamed bacterium
        str.301        unnamed bacterium
        str.307        unnamed bacterium
        str.34P        unnamed bacterium
        str.3_23       unnamed bacterium
        str.3_3        unnamed bacterium
        str.3_42       unnamed bacterium
        str.8_29       unnamed bacterium
        str.90P        unnamed bacterium
        str.B0253      unnamed bacterium
        str.B0623      unnamed bacterium
        str.B0629      unnamed bacterium
        str.B273       unnamed bacterium
        str.B704       unnamed bacterium
        str.B708       unnamed bacterium
        str.B713       unnamed bacterium
        str.B755       unnamed bacterium
        str.B773       unnamed bacterium
        str.BN3201     unnamed bacterium
        str.DF-3       unnamed bacterium
        str.DrosAM     unnamed bacterium
        str.DrosCA     unnamed bacterium
        str.DrosDP     unnamed bacterium
        str.DrosIN     unnamed bacterium
        str.DrosME     unnamed bacterium
        str.DrosOR     unnamed bacterium
        str.DrosSM     unnamed bacterium
        str.EE36_2     unnamed bacterium
        str.GH443      unnamed bacterium
        str.H58        unnamed bacterium
        str.H61        unnamed bacterium
        str.ICHT       unnamed bacterium
        str.Kw55       unnamed bacterium
        str.MA674      unnamed bacterium
        str.MF158      unnamed bacterium
        str.MF657      unnamed bacterium
        str.ML466      unnamed bacterium
        str.MS-1       unnamed bacterium
        str.N-HRM7     unnamed bacterium
        str.N-WesB     unnamed bacterium
        str.NIH        unnamed bacterium
        str.NPOH1      unnamed bacterium
        str.R3         unnamed bacterium
        str.RS28       unnamed bacterium
        str.RS4        unnamed bacterium
        str.S10        unnamed bacterium
        str.S11        unnamed bacterium
        str.S12        unnamed bacterium
        str.S13        unnamed bacterium
        str.S13A       unnamed bacterium
        str.S14        unnamed bacterium
        str.S18        unnamed bacterium
        str.S23        unnamed bacterium
        str.S25        unnamed bacterium
        str.S26        unnamed bacterium
        str.S26r       unnamed bacterium
        str.S2         unnamed bacterium
        str.S36        unnamed bacterium
        str.S51-W      unnamed bacterium
        str.S7         unnamed bacterium
        str.SporeA     unnamed bacterium
        str.SporeB     unnamed bacterium
        str.Strip3     unnamed bacterium
        str.T14        unnamed bacterium
        str.T19        unnamed bacterium
        str.T20        unnamed bacterium
        str.T25        unnamed bacterium
        str.T33        unnamed bacterium
        str.T36        unnamed bacterium
        str.T3         unnamed bacterium
        str.T41        unnamed bacterium
        str.T59        unnamed bacterium
        str.T60        unnamed bacterium
        str.T65        unnamed bacterium
        str.T67        unnamed bacterium
        str.T69        unnamed bacterium
        str.T73        unnamed bacterium
        str.Viikki     unnamed bacterium
        str.gamma2     unnamed bacterium
        str.liEE12     unnamed bacterium
        str.liEE34     unnamed bacterium
        str.liEE36     unnamed bacterium
        str.lig428     unnamed bacterium
        str.ligE32     unnamed bacterium
        str.ligE35     unnamed bacterium
        str.ligE38     unnamed bacterium
        str.ligE42     unnamed bacterium
        str.ligE43     unnamed bacterium
        str.ligE45     unnamed bacterium
        str.ligL81     unnamed bacterium
        str.ligL85     unnamed bacterium
        str.ligL86     unnamed bacterium
        str.ligL87     unnamed bacterium
        str.mediev     unnamed bacterium
        str.mpsp15     unnamed bacterium
        str.mpsp16     unnamed bacterium
        str.mpsp2      unnamed bacterium
        str.sfb2       unnamed bacterium
        str.sfb3       unnamed bacterium
        str.sfbrat     unnamed bacterium
        str.sp36       unnamed bacterium
        str.sp4011     unnamed bacterium
        str.sp4012     unnamed bacterium
        str.sp40_2     unnamed bacterium
        str.sp40_7     unnamed bacterium
        str.sp40_8     unnamed bacterium
        str.sp5_17     unnamed bacterium
        str.sp5_18     unnamed bacterium
        str.sp5_9      unnamed bacterium
        sym.Blcrcu     bacterial symbiont
        sym.Camnfl     bacterial symbiont
        sym.Camnhe     bacterial symbiont
        sym.Camnli     bacterial symbiont
        sym.Camnru     bacterial symbiont
        sym.Clypso     bacterial symbiont
        sym.Codao2     bacterial symbiont
        sym.Daphsp     bacterial symbiont
        sym.Glosau     bacterial symbiont
        sym.Glosbr     bacterial symbiont
        sym.Glosp2     bacterial symbiont
        sym.Glosta     bacterial symbiont
        sym.Lucina     bacterial symbiont
        sym.Lucipe     bacterial symbiont
        sym.M10        bacterial symbiont
        sym.M11        bacterial symbiont
        sym.M12        bacterial symbiont
        sym.M1         bacterial symbiont
        sym.M2         bacterial symbiont
        sym.M4         bacterial symbiont
        sym.M5         bacterial symbiont
        sym.MAR1       bacterial symbiont
        sym.MAR2       bacterial symbiont
        sym.Prntla     bacterial symbiont
        sym.Ricket     bacterial symbiont
        sym.Rimiex     bacterial symbiont

Changes in short-ID and/or full names are listed below (RDP short-ID:full name):
 
              RDP Release 6.0                            RDP Release 7.0
  --------------------------------------      -------------------------------------
  Ab.anurlyt:Aneurinibacillus aneurinolyticus Ab.anurlyt:Aneurinibacillus aneurinilyticus
  Anbn.cylin:Anabaena "cylindrica"            Anbn.cylin:"Anabaena cylindrica"
  Blc.aggreg:"Blastococcus aggregatus"        Blc.aggreg:Blastococcus aggregatus
  Brb.helvol:"Brevibacterium helvolum"        Brb.helvol:Brevibacterium "helvolum"
  C.piliform:"Clostridium piliforme"          C.piliform:Clostridium piliforme
  C.sacperbu:"Clostridium saccharoperbutylacetonicum"  C.sacperbu:Clostridium "saccharoperbutylacetonicum"
  Cal.saccha:"Caldocellum saccharolyticum"    Ccs.saccha:Caldicellulosiruptor saccharolyticus
  Cam.mucos2:Campylobacter mucosalis-like sp. Cam.mucos2:Campylobacter sp.
  Clrg.frits:Chlorogloeopsis "fritschii"      Clrg.frits:"Chlorogloeopsis fritschii"
  Cor.acacid:"Corynebacterium acetoacidophilum"  Cor.acacid:Corynebacterium "acetoacidophilum"
  Cor.aquati:"Corynebacterium aquaticum"         Cor.aquati:Corynebacterium "aquaticum"
  Cor.fastid:"Corynebacterium fastidiosum"       Cor.fastid:Corynebacterium "fastidiosum"
  Cor.gental:"Corynebacterium genitalium"        Cor.gental:Corynebacterium "genitalium"
  Cor.mediol:"Corynebacterium mediolanum"        Agmy.medio:Agromyces mediolanus
  Cor.tuberc:"Corynebacterium tuberculostearicum"  Cor.tuberc:Corynebacterium "tuberculostearicum"
  Cor.ulcer2:"Corynebacterium ulcerans"       Cor.ulcer2:Corynebacterium ulcerans
  Ctx.desert:Calothrix "desertica"            Ctx.desert:"Calothrix desertica"
  Dct.aurant:Dactylosporangium auranticum     Dct.aurant:Dactylosporangium aurantiacum
  Drb.sp:Dermabacter sp.                      Drb.sp1:Dermabacter sp.
  Erb.litorl:                                 Erb.litorl:Erythrobacter litoralis
  Eub.pectin:"Eubacterium pectinii"           Eub.pectin:Eubacterium "pectinii"
  F.lutescen:"Flavobacterium" lutescens       F.lutescen:Flavobacterium "lutescens"
  F.marinoty:"Flavobacterium" marinotypicum   F.marinoty:Flavobacterium marinotypicum
  Glph.vac_C:Glaucosphaera vacuolata -- cyanelle Glph.vac_C:Glaucosphaera vacuolata -- chloroplast
  L.catenafo:"Lactobacillus" catenaformis     L.catenafo:Lactobacillus catenaformis
  L.minutus:Lactobacillus minutus             Atp.minut2:Atopobium minutus
  L.vitulinu:"Lactobacillus" vitulinus        L.vitulinu:Lactobacillus vitulinus
  L.thermoph:"Lactobacillus" thermophilus     str.D:
  M.sp.831C4:Mycoplasma sp.                   Mes.lactuc:Mesoplasma lactucae
  M.sp.M1:Mycoplasma sp.                      Enp.melale:Entomoplasma melaleucae
  Mbs.metha3:"Methylobacillus methanolica"    Mbs.metha3:Methylobacillus "methanolica"
  Mbs.methyl:"Methylobacillus methylovora"    Mbs.methyl:Methylobacillus "methylovora"
  Mc.aeolicu:"Methanococcus aeolicus"         Mc.aeolicu:Methanococcus "aeolicus"
  Mrl.thmac2:Moorella thermoaceticum          Mrl.thmac2:Moorella thermoacetica
  Msc.serice:"Microscilla sericea"            Msc.serice:Microscilla "sericea"
  Msr.mazeii:Methanosarcina mazeii            Msr.mazei1:Methanosarcina mazei
  Myb.brandr:Mycobacterium sp.                Myb.brandr:Mycobacterium branderi
  Osc.6304:Oscillatoria sp.                   Osc.6304:"Oscillatoria sp."
  Osc.7515:Oscillatoria sp.                   Osc.7515:"Oscillatoria sp."
  Osc.amphig:Oscillatoria "amphigranulata"    Osc.amphig:"Oscillatoria amphigranulata"
  Osc.limnet:Oscillatoria "limnetica"         Osc.limnet:"Oscillatoria limnetica"
  Osc.willam:Oscillatoria williamsii          Osc.willam:"Oscillatoria williamsii"
  Pae.macer2:Paeniacillus macerans            Pae.macer2:Paenibacillus macerans
  Phrm.ectoc:Phormidium "ectocarpi"           Phrm.ectoc:"Phormidium ectocarpi"
  Plec.borya:Plectonema "boryanum"            Plec.borya:"Plectonema boryanum"
  Polt.com_C:Polytrichum commune              Polt.com_C:Polytrichum commune -- chloroplast
  Psan.galea:Pseudanabaena "galeata"          Psan.galea:"Pseudanabaena galeata"
  Ric.parker:Rickettsia parker                Ric.parker:Rickettsia parkeri
  Rps.marina:"Rhodopseudomonas marina"        Rps.marina:Rhodopseudomonas marina
  Spgn.com_C:Sphagnum compactum               Spgn.com_C:Sphagnum compactum -- chloroplast
  Spl.inulin:Sporolactobacillus inulinis      Spl.inulin:Sporolactobacillus inulinus
  Spp.sp.CN5:Spiroplasma sp.                  Spp.clarki:Spiroplasma clarkii
  Spp.sp.DU1:Spiroplasma sp.                  Spp.diabro:Spiroplasma diabroticae
  Spp.sp.TG1:Spiroplasma sp.                  Spp.gladia:Spiroplasma gladiatoris
  Spp.sp.Y32:Spiroplasma sp.                  Spp.ixodet:Spiroplasma ixodetis
  Spp.sp.MQ1:Spiroplasma sp.                  Spp.monobi:Spiroplasma monobiae
  Stp.aeroph:"Staphylococcus aerophilus"      Stp.aeroph:Staphylococcus "aerophilus"
  Stp.pulver:Staphylococcus sp.               Stp.pulver:Staphylococcus pulvereri
  T.thermoph:"Thermus thermophilus"           T.thermoph:Thermus thermophilus
  Tab.cellu2:"Thermoanaerobacter cellulolyticus"  Tab.cellu2:Thermoanaerobacter "cellulolyticus"
  Tab.cellul:"Thermoanaerobacter cellulolyticus"  Tab.cellul:Thermoanaerobacter "cellulolyticus"
  Tam.lethyl:"Thermoanaerobium lactoethylicum"    Tam.lethyl:Thermoanaerobium "lactoethylicum"
  Tc.peptphl:Thermococcus sp.                 Tc.peptphl:Thermococcus peptonophilus
  V.marinus3:Vibrio "marinus"                 V.marinus3:Vibrio marinus
  Xen.nemato:Xenorhabdus nematophilus         Xen.nemph2:Xenorhabdus nematophilus
  str.gamma:                                  sym.Lxussp:

Changes in nucleotide sequence:
         Organism                                     Now represented by RDP name
  ----------------------------------                  ----------------------------
  Clv.michg3:Clavibacter michiganensis -- deleted         Clv.mich11
  Ral.eutro2:Ralstonia eutropha -- deleted; <200 bp minimum
  Rhb.huaku3:Rhizobium huakuii -- deleted                 Rhb.ciceri
  Spg.spB712:Sphingomonas sp. -- deleted; <200 bp minimum

Changes in GenBank/EMBL associated accession numbers:
         Organism                                 Organism 
  ----------------------------------        ----------------------------
  E.coli8:M25051                            E.coli8:M25051; M25052
  Gmt.obscur:X56305                         Gmt.obscur:X56305 S39802
  Lcn.mpar40:L14711; L14712; L14713 L14673  Lcn.mpar40:L14711 L14673; L14712 L14673; L14713 L14673
  Lcn.mpara:L14719 L14674; L14720           Lcn.mpara:L14719 L14674; L14720 L14674
  M.mlo.ACL2:L26997                         M.mlo.ACL2:L26997; L26998
  M.mlo.AP2:L26995                          M.mlo.AP2:L26995; L26996
  M.mlo.EY3:L27025                          M.mlo.EY3:L27025; L27026
  M.mlo.Pwb2:L27032                         M.mlo.Pwb2:L27032; L27033
  M.mlo.beet:L27045                         M.mlo.beet:L27045; L27046
  M.mlo.blue:L27007                         M.mlo.blue:L27007; L27008
  M.mlo.chok:L27009                         M.mlo.chok:L27009; L27010
  M.mlo.lyp:L27030                          M.mlo.lyp:L27030; L27031
  M.mlo.pota:L27039                         M.mlo.pota:L27039; L27040
  M.mlo.pyl:L27041                          M.mlo.pyl:L27041; L27042
  M.mlo.west:L27048                         M.mlo.west:L27048; L27049
  Pas.multo2:M21593 M23298; M21593 M23299   Pas.multo2:M23298 M21593; M23299 M21593
  Pln.maris:X62910                          Pln.maris:X62910 S39798
  Pnb.necess:                               Pnb.necess:X93019
  Prcl.didem:                               Prcl.didem:X63141
  Spg.asacch:D28572                         Spg.asacch:D28571; D28572; D28573
  Spg.mali:D28574                           Spg.mali:D28574; D28575; D28576
  Spg.pruni:D28568                          Spg.pruni:D28568; D28569; D28570
  env.MC113:X64375                          env.MC113:X64375 S39803
  env.MC11:X64378                           env.MC11:X64378 S39806
  env.MC18:X64374                           env.MC18:X64374 S39793
  env.MC1:X64379                            env.MC1:X64379 S39807
  env.MC55:X64377                           env.MC55:X64377 S39805
  env.MC98:X64376                           env.MC98:X64376 S39804
  str.TH3:M79434; M79433                    str.TH3:M79433; M79434

++++++++++++++++
+  sec_struct  +
++++++++++++++++
No changes have been made in this directory for Release 7.0.

+++++++++++++++
+  sequences  +
+++++++++++++++
The directories (sequences) and subdirectories (A-Z) have been updated
to contain the SSU sequences in individual files with the file name
following the format of <RDP shortid>_gb. For example, the aligned
sequence for RDP shortid Tc.celer is in the directory
/alignments/sequences/T and the file name is Tc.celer_gb. RDP shortids
which begin with a lower case letter (e.g., env.SBAR16) are in the same
subdirectory as RDP shortids which begin with a capitalized letter
(i.e. env.SBAR16_gb would be in /alignments/sequences/E).
 
+++++++++++++
+   trees   +
+++++++++++++
The phylogenetic tree for small subunit prokaryotic organisms has been
updated to contain 6205 sequences.

The phylogenetic tree for small subunit eukaryotic organisms has been
updated to contain 2055 sequences.

The phylogenetic tree for small subunit mitochondrial sequences has been
updated to contain 1503 sequences.

For all sequences in the respective tree, they have been numbered to
correspond to the order in the phylogenetic tree.  These numbers are
_NOT_ RDP accession numbers.

This index number can be used to identify organisms in the respective
*.alpha and *.phylo files and vice versa.  This number is _NOT_ a
permanent, fixed number; it will be different for future trees or even
for subtrees created from the Release 7.0 trees.

*********************
**  SSU_Euk.rep.*  **
*********************
The SSU_Euk.rep.* phylogenetic tree files (in newick, PostScript, and
printable formats) contain 140 sequences.

**********************
**  SSU_Mito.rep.*  **
**********************
The SSU_Mito.rep.* phylogenetic tree files (in newick, PostScript, and
printable formats) contain 76 sequences.

**********************
**  SSU_Prok.rep.*  **
**********************
The SSU_Prok.rep.* phylogenetic tree files (in newick, PostScript, and
printable formats) contain 98 sequences.

**************************
**  SSU_Euk.taxnodes.*  **
**************************
The SSU_Euk.taxnodes.* phylogenetic tree files (in newick, PostScript, and
printable formats) contain 375 branches.

***************************
**  SSU_Mito.taxnodes.*  **
***************************
The SSU_Mito.taxnodes.* phylogenetic tree files (in newick, PostScript, and
printable formats) contain 210 branches.

***************************
**  SSU_Prok.taxnodes.*  **
***************************
The SSU_Prok.taxnodes.* phylogenetic tree files (in newick, PostScript, and
printable formats) contain 586 branches.

+++++++++++++++
+  unaligned  +
+++++++++++++++
This directory includes ssu entries in UNALIGNED GenBank format only.
See the unaligned/00README file for more information.

*******************
**  SSU_Unal.gb  **
*******************
Data for 22326 ssu rRNA sequences are included in the SSU_Unal.gb file.
The entries are not in any particular order.

+++++++++++++++
+  sequences  +
+++++++++++++++
The directories (sequences) and subdirectories (A-Z) have been
updated to contain the unaligned SSU sequences in individual files with
the file name following the format of <RDP shortid>_gb or <LOCUS>_gb.
For example, the unaligned sequence for RDP shortid Tc.celer is in the
directory /unaligned/sequences/T and the file name is Tc.celer_gb. RDP
shortids which begin with a lower case letter are in the same
subdirectory as RDP shortids which begin with a capitalized letter.

=============================================================================