How To Interpret Similarity Matrix Results
  A more detailed explanation is available.

  Similarity Matrix Results

Similarity Matrix version 1.1
written by Niels Larsen

Date: Wed Sep 8 19:35:48 1999
RDP data: Small Subunit rRNAs
Columns: 1448 alignment positions were used
Matching: Full ambiguity code matching
Complete %: 90
Templates: 4

1 2 3 4 5 6 7 8 9 10
AB020030 1 .991.973.978.979.802.789.785.783.783
Asy.mirum 2 .009.973.988.981.797.787.785.781.780
Lz.albicap 3 .027.027.964.964.800.792.790.784.784
Asy.mirum2 4 .022.012.036.974.796.786.783.779.778
Sct.longis 5 .021.019.036.026.800.790.785.783.783
X95817 6 .198.203.200.204.200.932.899.902.899
O.marismor 7 .211.213.208.214.210.068.904.897.897
Hbac.halo3 8 .215.215.210.217.215.101.096.898.897
Hla.lacun3 9 .217.219.216.221.217.098.103.102.982
Hla.chitn2 10 .217.220.216.222.217.101.103.103.018

  The Alignment Used
  The matrix above was calculated from the regions highlighted below (visible with Netscape 3.0+). Gaps (indels) were not included in the match/mismatch count. Here is a description of the method and how to interpret the output.

AB020030 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAGCGGU-AAGGC-------CCUUCGGG--------GUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUUGGAAACGAGGUCUAAUACCGGAUACG--ACCCUUGAAGGCAUCUUUGAGGG-----------------UGGAAAGU------UCCG-------GCGGUAUGGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAG-C---------GCAA----------G-UGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACCCCGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGAC-UUCCA-CGUUCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGCA-CUGGAAACC-GG-UA--GAGA--U-AUCGGCC-----CCCUUGU^^GG----CCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGU-CAA-CUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAAACCGUGAGGUG-----------GA-GCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCCG---UGG-CUCAACCCGCAA-GGGGGAGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGU...................
Asy.mirum 2 ..........................................UGGCGGCGUGCUUAACACAUGCAAGUCGAGCGGU-AAGGC-------CCUUCGGG--------GUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUGGGAAACUAGGUCUAAUACCGGAUACG--AGCCU--U-C-----------CCN-CAU---GGGGUUGGUUGGAAAGU------UCCG-------GCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGACGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAG-C---------GCAA----------G-UGACGGUAGGUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACCCCGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGAC-UUCCA-CGUCCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGCA-CUGGAAACC-AG-UA--GAGA--U-AUUGGCC-----CCCUUGU^^GG----CCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGU-CAA-CUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGUGAGGUG-----------GA-GCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCCG---UGG-CCCAACCCGCAA-GGGGGGGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGU...................
Lz.albicap 3 ...............................C-GAAC-GC--UGGCGGCGUGCUUAACACAUGCAAGUCGAACGGU-AAGCC-------CCUUCGGG--------GUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCCUGACUCUGGGAUAAGCCUUGGAAACGAGGUCUAAUACCGGAUAUG--ACACU--G-A-----------ACUGCAU---GGUUUGGUGUGGAAAGU------UCCG-------GCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAG-C---------GCAA----------G-UGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACUCCAAGCUUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGGC-UUCCA-CGCCCUCUGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGGA-CUAGAAAGC-UC-UA--GAGA--U-AGAGCCU-----CCCUUGU^^GG----CUGGU-UCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCACGUAAUGGUGGGGACUCAUGGGAGACUGCCGGGGU-CAA-CUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGCGAGGUG-----------GA-GCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAG-CCG---UGG-CUCAACCCGCAA-GGGGGGGAGACGUCGAAGGUGGGACUGGCGAUUGGGGUGAA................................................
Asy.mirum2 4 ..........AGUUUGAUCCUGGCUCAG-GAC-GAAC-GC--UGGCGGCGUGCUUAACACAUGCAAGUCGAGCGGU-AAGGC-------CCUUCGGG--------GUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUGGGAAACUAGGUCUAAUACCGGAUACG--AGCCC--U-UC----------CCCGCAU---GGG-UUGGUUGGAAAGU------UCCG-------GCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGACGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAG-C---------GCAA----------G-UGACAGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCNAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUC-CGUCGGCCGUGAAANCUUGGGGCUUAACCCCGAGCCUGCGGUCCAUACGGGCAGACUUGAGUUAGCGC-GGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGAGCUAGGUGUGGGGGAC-UUCCA-CGUCCUCCGUGCCGCACGUAACGCAUUAAGCUCCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGCA-CUGGAAACC-AG-UA--GAGA--U-AUUGGCC-----CCCUUGU^^GG----CCGGU-GUACAGGUG---CAUGGCUGUCGUCAGCU-GUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUCUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGU-CAA-CUCGGAGGAAGGUGGGGAUGNCGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGUGAGGUG-----------GA-GCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAUUCGCGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCCGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCCAAGCCCG---UGG-CCCAACCCGCAA-GGGGGGGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGCUAG-CGUACCGGAAGGUGCGGCUGGAUCACCUCCUU
Sct.longis 5 CUNAUUGGAGAGUUNNAUCCUGGCUCAG-GAC-GAAC-GC--UGGCGGCGUGCUAAACACAUGCAAGUCGAGCGGU-AAGGC-------C-UUCGGG--------GUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUNCCCUGUACUCUGGGAUAAGCCUGGGAAACURGGUCUAAUACCGGAUACG--ACCUR--U-C-----------ACCGCAU---GGUGGGGGGUNGAAAGU------UCCG-------GCGGUAUGGGAUGGACCCGCGGCCUAUCAGCUNGUUGGUGGGGUNAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUNAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUNUUUCAGCAGGGACGAAG-C---------GCAA----------G-UGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCCAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUUGCGUCGGCUGUGAAAACUUCACGCUNAACGUGGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGAC-UNCCA-CGUCCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUNAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGCA-CUGGAAACC-AG-UA--GAGA--U-AUUGGCC-----CCCUNGU^^NG----CCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUYGUUCCAUGUUGCCAGCGCGUAAUGGCGGGGACUCAUGGGAGACUGCCGGGGU-CAA-CUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUNAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAGAGGGCUGCGAAGCCGUGAGGUG-----------GA-GCGAAUCCCACAAAGCCGGUCUNAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGYUUNGUACACACCGCCCNUCAUGUCACGAAAGUCGGUAACACCCGAAGCCCG---UGG-CCCAACCCGUAA-GGGCGGGAGCGGUCGAAGGUGGGACUGGCGAU.........................................................
X95817 6 ..........................................UGGCGGCGUGCUUAACACAUGCAAGUCGAACGAG------AAAGCUACCUUCGGGUAGUGAGU----AA-AGCGGCGGACGGGUGAGUAACACGUGGGGAACAUACCUUUAAGACUGGGAUAACUUCUGUAAAGGGAAGCUAAUACCGGAUAAU-----------------------CUC-CUUUCGGAG--------CAAAGAUGGCUUAUUAU--GCUAUUGCUUAGAGAUGGGCCCGCGUCCCAUUAGCUAGUUGGUGAGAUAAAAGCUCACCAAGGCAACAAUGGGUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCUGCAGUGGGGAAUCUUCCACAAUGGACGAAAGUCUGACGGAGCAACGCCGCGUGAGUGAAGAAGGUCUUCGGAUCGUAAAGCUCUGUCUUUAGGGAAGAAUACUUUAAUUGUGAAUAACAGCUAGGGUUGACGGUACCUAUAAAGGAAGCCCUGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGAGGGCAAGCGUUGUCCGGAAUCAUUGGGCGUAAAGGGUACGCAGGCGGUCUAGUAAGUCAGAGGUGAAAUCCACCGACUCAAUCGGCGAACUGCCUUUGAAACUACUGGACUUGAGGAUAAGGGAAGAAAGUGGAAUUCCUAGUGUAGUGGUGAAAUACGUAGAUAUUAGGAAGAACAUCAAUGGCGAAGGCAACUUUCUAUCUUAUCCCUGACGCUGAGGUACGAAAGCUAGGGUAGCAAACGGGAUUAGAUACCCCGGUAGUCCUAGCCGUAAACGCUGGAUACUAGGUGUUGGGGG-UUCGAUU--CCCUCGGUGCCGGAGUUAACGCAUUAAGUAUCCCGCCUGGGGAUUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGAACUUGACAUC-CC-GUGACUACCUGUGAGAGCAGGGUUAA----------UC-U-UUUGGAG-GACAC-GAAGACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGUCCUUAGUUGCCAGCACGUCAAGGUGGGGACUCUAAGGAGACUGCCGCGGAAAAA-CGCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUUCUGGGCUACACACGUGCUACAAUGGUCUGUACAAAAGGUUGCGAUACCGCGAGGUUUAGCAAAUCCUGAAAAGC------------AGAUCUCAGUUCGGAU-UGCAGGCUGCAACUCGCCUGCAUGAAGCUGGAGUCGCUAGUAAUCGCGGAUCAGA-ACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACCCGAGUUGGGGGCACCAGAAGUCGUUUAAGGAC-----------------------GCCGAAGGUGUGCCUGAUAAGGGGGGUGAAGUCGUAACAAGGUAGCCGUA............................
O.marismor 7 ..........................................TGGCGGCGTGCTTAACACATGCAAGTTGAACGCG------AAAGTTACCTTCGGGTAATGAGT----AG-AGTAGCGGACGGGTGAGTAACGCGTGGGTTATCTACCTTTAAGTTAGGAATAACCTCTCGAAAGAGGGGCTAATACCTGATAAT-----------------------CTC-TTAC--GAG--------CAAAGATGGCTTCTTCTTAGCTATCGCTTAAAGATGAGCCTGCGTCCCATTAGCTAGTTGGTGAGGTAAGAGCTCACCAAGGCGACAATGGGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCTGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAATGATGAAGGCCTTCGGGTCGTAAAATTCTGTCCTTAGGGAAGAATATTTTGGTTGTTAATAACAGCTGAAGTTGACGGTACCTTTGGAGGAAGCCCTGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGAGGGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGGGTACGCAGGCGGTCTAGTAAGTCAGAGGTGAAATCCACCGGCTCAACCGGTGAACTGCCTTTGATACTGCTAGACTTGAGGATAAGAGAAGAAAGCGGAATTCCTAGTGTAGTGGTGAAATACGTAGATATTAGGAAGAATACCAATGGCGAAAGCAGCTTTCTAACTTACTCCTGACGCTCAGGTACGAAAGCTAGGGTAGCAAACGGGATTAGATACCCCGGTAGTCCTAGCCGTAAACGATGGATACTAGGTGTTGGAGG-TTCGATT--CCTTCGGCGCCGCAGTTAACGCATTAAGTATCCCGCCTGGGGATTACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGAACTTGACATC-CCTGTGACTAT-TT-CT--TAAC--C-GAAA-GTCTC-CTC-T-TT^^GAG-GACACAGAAGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCCTATCCTTAGTTGCCAGCACGTAATGGTGGGGACTCTAAGGAGACTGCCGCGGAAAAA-CGCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTTCTGGGCTACACACGTGCTACAATGGTCTATACAGAGGGTGGCTACACCGCGAGGTG-----------AT-GCTAATCTCTAAA-GTAGATCTCAGTTCGGAT-TGCAGGCTGAAACTCGCCTGCATGAAGCTGGAATCGCTAGTAATCGCGGATCAGA-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACCCGAGTCGGGGGCACCAGAAGTCAT---CGG-CCCAAC--TTAGT--GAGGGAGATGCCGAAGGTGTGCCTGGTAAGGGGGGTGAAGTCGTAACAAGGTAGCCGTA............................
Hbac.halo3 8 ..........................................TGGCGGCGTGCTTAACACATGCAAGTTGTGCGAG------AAAGTTACCTTCGGGTAACAAGT----AA-AGCAGCGAACGGGTGAGTAACGCGTAAGT-ATCTACCTTTAAGTCTGGGATAACTCTCCGAAAGAGGGGCTAATACCAGATATA-----------------------CTCCTTTG--GAG--------GAAAGATGGT---ATT---ACTATTGCTTAAAGATGAGCTTGCGTCCCATTAGCTAGTTGGTGAGATAACAGCTCACCAAGGCAACGATGGGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCTGCAGTGGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCCTTAGGGTCGTAAAGCTCTGTCTTTAGGGAAGAACACTTTAGTAGTGAATAACTGCTAGAATTGACGGTACCTTTAAAGGAAGCCCCGGCTAATTACGTGCCAGCAGCCGCGGTAATACGTAAGGGGCTAGCGTTGTCCGGAATTACTGGGCGTAAAGGGTACGCAGGCGGTCTAGCAAGTCAGAGGTGAAATCCATTGGCTTAACCAATGAAGTGCCTTTGAAACTGTTAGACTTGAGAGCAAGAGAGGAAAGTGGAATTCCTGGTGTAGTGGTGAAATACGTAGATATCAGGAAGAATACCAATGGCGAAAGCAGTCTTCTGGCTTGACTCTGACGCTGAGGTACGAAAGCTAGGGTATCAAACGGGATTAGATACCCCGGTAGTCCTAGCTGTAAACGCTGGATACTAGGTGTTGGAGG-TTCAACT--CCTTCGGTGCCGTAGTTAACGCTTTAAGTATCCCGCCTGGGGATTACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGAACTTGACATC-CCTGTGATCGT-TC-TT--TAAC--A-AGAACTT-TT--CCTT-TT^^GG--AACACAGATGACAGGTGGTGCATGGCTGTCGTCACGTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGTAACCCCTATTCTTAGTTGCCAGCATGTAGTGATGGGGACTCTAAGAAGACTGCCGCGGGAGCAACGCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTTCTGGGCTACACACGTGCTACAATGGTTTATACAGAGGGGAGCGAAGCCGCAAGGTG-----------GA-GCAAATCCCCAAAAGTAGACCTCAGTTCGGAT-TGCAGATTGCAACTCATCTGCATGAAGCTGGAGTCGCTAGTAATCGTGGATCAGA-ATGCCACGGTGAATCCGTTCTCGGGCCTTGTACACACCGCCCGTCACACCACCCGAGTTGGGGGCACCAGAAGTCAC---TGA-CCTAACT-TTT---AGAAGGAAGTGCCGAAGGTGTGCCCGATAAGGGGGGTGAAGTCGTAACAAGGTAGCCGTA............................
Hla.lacun3 9 ..........................................TGGCGGCGTGCTTAACACATGCAAGTTGCGCGAG------AAAGCTACCTTCGGGTAGTGAGT----AA-AGCGGCGAACGGGTGAGTAACGCGTGGGTAATCTGCCTTTAAGTTAAGGATAACTTCTCGAAAGGGAAGCTAATACTTAATAATAG------------------------------------------TAAAGATGGC---TTT---GCTATCGCTTAAAGATGAGCCCGCGTCCCATTAGCTTGTTGGTAGGGTAAAGGCCTACCAAGGCAACAATGGGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCTGCAGTGGGGAATCTTCCGCAATGAGCGAAAGCTTGACGGAGCAACGCCGCGTGAGTGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTTAGGGAAGAACACCCCAGTAGATAATACCTGCTGGGATTGACGGTACCTTTGGAGGAAGCTCCGGCTAATTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCNAGCGTTGTCCGGAATCACTGGGCGTGAAGGGTGCGCAGGCGGTCTAGTAAGTCAAGAGTGAAATCCATCGGCTCAACCGGTGAACTGCTTTTGAAACTATTAGACTTGAGGACAGGAGAAGGAAGTGGAATTCCTAGTGTAGTGGTGAAATACGTAGATATTAGGAAGAATACCAATGGCGAAGGCAGCTTCCTAGCCTGATCCTGACGCTGAGGTACGAAAGCTAGAGTATCAAACGGGATTAGATACCCCGGTAGTTCTAGCTGTAAACGCTGGACACTAGGTGTTGGGGG-TTCAACT--CCCTCGGTGCTGCAGTTAACGCGTTAAGTGTCCCGCCTGGGGATTACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATCTGGTTTAATTCGAAGCAACGCGAAGAACATTACCAGGGTTTGACATC-C-TATGACCAT-CT-GT--GAAA--G-CAGAGTC-TGGCTC-T-TT^^GAGTCACATAG-TGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGTTCTTAGTTGCCAGCACGTAATGGTGGGGACTCTAAGAAGACTGCCACAGAAAAAATGTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATACTCTGGGCTACACACGTGCTACAATGGTCTAAACAGAGGGAAGCAATACCGCGAGGTT-----------AA-GCGAATCTCACAAATTAGATCTCAGTTCGGAT-TGCAGATTGCAATTCACCTGCATGAAGCTGGAGTCGCTAGTAATCGTGGATCAGA-ATGCCACGGTGAATATGTTCTCGGGCCTTGTACACACCGCCCGTCACACCACCCGAGTTGGGGACACCAGAAGTCAT---T-C-GC------AATA------GCGAGTGCCGAAGGTGTGCCTGATAAGGGGGGTGAAGTCGTAACAAGGTAGCCGTA............................
Hla.chitn2 10 ..........................................TGGCGGCGTGCTTAACACATGCAAGTTGCGCGAGA-----AA-GCTACCTTCGGGTAGTGAGT----AA-AGCGGCGAACGGGTGAGTAACGCGTGGGTAATCTACCTTTAAGTTAAGGATAACTTTTCGAAAGGAAAGCTAATACTTAATAATAA------------------------------------------TAAAGATGGC---TTT---GCTATCGCTTAGAGATGAGCCCGCGTCCCATTAGCTTGTTGGTAGGGTAAAGGCCTACCAAGCCAACAATGGGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCTGCAGTGGGGAATCTTCCGCAATGAGCGAAAGCTTGACGGAGCAACGCCGCGTGAGTGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTTAGGGAAGAACAACCCAGTTGATAATACCAGCTGGGCTTGACGGTACCTTTGGAGGAAGCCTCGGCTAATTACGTGCCAGCAGCCGCGGTAATACGTAAGAGGCTAGCGTTGTCCGGAATCACTGGGCGTGAAGGGTGCGCAGGCGGTCTAGTAAGTCAAGAGTGAAATCCATCGGCTCAACCGGTGAACTGCTTTTGAAACTATTAGACTTGAGGACAGGAGAAGGAACTGGAATTCCTAGTGTAGTGGTGAAATACGTAGATATTAGGAAGAATACCAATGGCGAAGGCAGCTTCCTAGCCTGATCCTGACGCTGAGGTACGAAAGCTAGAGTATCAAACGGGATTAGATACCCCGGTAGTTCTAGCTGTAAACGCTGGACACTAGGTGTTGGGGG-TTCAACT--CCCTCGGTGCTGCAGTTAACGCGTTAAGTGTCCCGCCTGGGGATTACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACATTACCAGGGTTTGACATC-C-TATGACCAT-CT-GT--GAAA--G-CAGAGTT-TGTCTC-T-TT^^GAGTCACATAG-TGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGTTCTTAGTTGCCAGCACGTAATGGTGGGGACTCTAAGAAGACTGCCGCAGAAAAAATGCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATACTCTGGGCTACACACGTGCTACAATGGTCTAAACAGAGGGAAGCAAGACTGCGAAGTT-----------AA-GCGAATCTCACAAATTAGATCTCAGTTCGGAT-TGCAGATTGTAATTCATCTGCATGAAGCTGGAGTCGCTAGTAATCGTGGATCAGA-ATGCCACGGTGAATATGTTCTCGGGCCTTGTACACACCGCCCGTCACACCACCCGAGTTGGGGACACCAGAAGTCAT---T-T-GC------GATA------GCAAGTGCCGAAGGTGTGCCTGATAAGGGGGGTGAAGTCGTAACAAGGTAGCCGTA............................