Align Sequence Results

How To Interpret Align Sequence Results

The green color highlights columns where all your sequences align well with its template sequences, which immediately follows each of yours. The yellow color is for the 2'nd, 3'rd, ..., most similar RDP sequence (not used as template). The red color highlights positions where it was necessary to insert gaps in the template sequence. A more detailed explanation is available.

Align Sequence Results

SEQUENCE ALIGN version 1.7
written by Niels Larsen.

RDP data : Small Subunit rRNAs (Prokaryotic)

User data : aligner_16522

Columns : 1455 positions aligned well across all uploaded sequences

Date : Thu Sep 2 19:21:22 1999

raw_16522 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GCUCAGSMCGAGCUGGCYKN GUGCUU A AACACAUG C CAAGUCGAGCGGUAAGGCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUUGGAAACGAGGUCUAAUACCGGAUACGA CCCUUGAAGGCAUCUUUGAGGG--------------- UGGAAAGUUCCGGCGGUAUGGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACCCCGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGACUUCCA-CGUUCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCGGUAGAGAUAUCGGCCCCCUUGUGGCCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAAACCGUGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCCGUGGCUCAACCCGCAAGGGGGAGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGU...................
Asy.mirum 2 .........................................U-GGC-GGC- GUGCUU ^ AACACAUG ^ CAAGUCGAGCGGUAAGGCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUGGGAAACUAGGUCUAAUACCGGAUACGA GCCU--U-C-----------CCN-CAUGGG-GUUGGU UGGAAAGUUCCGGCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGACGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACGGUAGGUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACCCCGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGACUUCCA-CGUCCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCAGUAGAGAUAUUGGCCCCCUUGUGGCCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGUGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCCGUGGCCCAACCCGCAAGGGGGGGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGU...................
Lz.albicap 3 ..............................C-GAAC-GC--U-GGC-GGC- GUGCUU ^ AACACAUG ^ CAAGUCGAACGGUAAGCCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCCUGACUCUGGGAUAAGCCUUGGAAACGAGGUCUAAUACCGGAUAUGA CACU--G-A-----------ACUGCAUGGU-UUGGUG UGGAAAGUUCCGGCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACUCCAAGCUUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGGCUUCCA-CGCCCUCUGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGG-ACUAGAAAGCUCUAGAGAUAGAGCCUCCCUUGUGGCUGGU-UCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCACGUAAUGGUGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGCGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAG-CCGUGGCUCAACCCGCAAGGGGGGGAGACGUCGAAGGUGGGACUGGCGAUUGGGGUGAA................................................
Asy.mirum2 4 ..........AGUUUGAUCCUGGCUCAGGAC-GAAC-GC--U-GGC-GGC- GUGCUU ^ AACACAUG ^ CAAGUCGAGCGGUAAGGCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUGGGAAACUAGGUCUAAUACCGGAUACGA GCCC--U-UC----------CCCGCAUGGG--UUGGU UGGAAAGUUCCGGCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGACGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACAGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCNAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUC-CGUCGGCCGUGAAANCUUGGGGCUUAACCCCGAGCCUGCGGUCCAUACGGGCAGACUUGAGUUAGCGC-GGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGAGCUAGGUGUGGGGGACUUCCA-CGUCCUCCGUGCCGCACGUAACGCAUUAAGCUCCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCAGUAGAGAUAUUGGCCCCCUUGUGGCCGGU-GUACAGGUG---CAUGGCUGUCGUCAGCU-GUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUCUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGNCGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGUGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAUUCGCGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCCGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCCAAGCCCGUGGCCCAACCCGCAAGGGGGGGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGCUAG-CGUACCGGAAGGUGCGGCUGGAUCACCUCCUU
Sct.longis 5 CUNAUUGGAGAGUUNNAUCCUGGCUCAGGAC-GAAC-GC--U-GGC-GGC- GUGCUA ^ AACACAUG ^ CAAGUCGAGCGGUAAGGCC-UUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUNCCCUGUACUCUGGGAUAAGCCUGGGAAACURGGUCUAAUACCGGAUACGA CCUR--U-C-----------ACCGCAUGGU-GGGGGG UNGAAAGUUCCGGCGGUAUGGGAUGGACCCGCGGCCUAUCAGCUNGUUGGUGGGGUNAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUNAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUNUUUCAGCAGGGACGAAGCGCAAGUGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCCAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUUGCGUCGGCUGUGAAAACUUCACGCUNAACGUGGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGACUNCCA-CGUCCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUNAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCAGUAGAGAUAUUGGCCCCCUNGUNGCCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUYGUUCCAUGUUGCCAGCGCGUAAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUNAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAGAGGGCUGCGAAGCCGUGAGGUGGAGCGAAUCCCACAAAGCCGGUCUNAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGYUUNGUACACACCGCCCNUCAUGUCACGAAAGUCGGUAACACCCGAAGCCCGUGGCCCAACCCGUAAGGGCGGGAGCGGUCGAAGGUGGGACUGGCGAU.........................................................
Kt.virido2 6 ................................................... ...... ^ .......G ^ CAAGTCGAGCGGTAAGG-CCTTCGGGGTACACGAGCGGCGAACGGGTGAGTAACACGTGGGCAACCTGCCCTACACTCTGGGATAAGCCCGGGAAACTGGGTCTAATACCGGATATGA CTTC--G-CG----------GTCGCATGGTCGTGGGG TGGAAAGTTCCGGCGGTGTAGGATGG-CCCGCGGCCTATCAGCTTGTTGGTGGGGTAGTGGCCTACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGAAAGCCTGAGCCAGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAGCGCGAGTGACGGTACCTGCAGAAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGTTTGTCGCGTCGACTGTGAAAACCTACAGCTTAACTGTGGGCTTGCAGTCGATACGGGCAGACTTGAGTTCGGTAGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGGCGAAGGCGGGTCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCGACGCGTAAACGGTGGGCGCTAGGTGTGGGGGTCTTCCAC-GACTTCCGTGCCGTAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGCTTGACATG-CATTGGAAACCTGCAGAGATGTAGGCTCCCTTGTGGCCGGTG-CACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCCATGTTGCCAGCGCGTAATGGCGGGGACTCATGGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACACATGCTACAATGGCCGGTACAAAGGGCTGCTAAGCCGTGAGGTGGAGCGAATCCCAGAAAGCCGGTCTCAGTTCGGAT-CGGGGTCTGCAACTCGACCCCGTGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGTAACACCCGAAGCCCGTGGCCCAACCCGTAAGGGGGGGAGCGGTCGAAGGTGGGACTGGCGATTGGGACG..................................................

Converted Sequence Data: Analysis Process #16522

LOCUS raw_16522 1480 bp DEFINITION raw_16522 [Unknown form], 1480 bases, B239F956 checksum. ORIGIN 1 GCTCAGsmCG AxxGCTGGCy knGTGCTxxu AAaCACATGC cAAGTCGAGC 51 GGTAAGGCCC TTCGGGGTAC ACGAGCGGCG AACGGGTGAG TAACACGTGG 101 GTAACCTGCC CTGTACTCTG GGATAAGCCT TGGAAACGAG GTCTAATACC 151 GGATACGACC CTTGAAGGCA TCTTTGAGGG TGGAAAGTTC CGGCGGTATG 201 GGATGGACCC GCGGCCTATC AGCTTGTTGG TGGGGTAATG GCCTACCAAG 251 GCGACGACGG GTAGCCGGCC TGAGAGGGTG ACCGGCCACA CTGGGACTGA 301 GACACGGCCC AGACTCCTAC GGGAGGCAGC AGTGGGGAAT ATTGCACAAT 351 GGGCGAAAGC CTGATGCAGC GACGCCGCGT GAGGGATGAC GGCCTTCGGG 401 TTGTAAACCT CTTTCAGCAG GGACGAAGCG CAAGTGACGG TACCTGCAGA 451 AGAAGCACCG GCTAACTACG TGCCAGCAGC CGCGGTAATA CGTAGGGTGC 501 GAGCGTTGTC CGGAATTATT GGGCGTAAAG AGCTCGTAGG CGGTTTGTCG 551 CGTCGGCCGT GAAAACTTGG GGCTTAACCC CGAGCCTGCG GTCGATACGG 601 GCAGACTTGA GTTCGGCAGG GGAGACTGGA ATTCCTGGTG TAGCGGTGAA 651 ATGCGCAGAT ATCAGGAGGA ACACCGGTGG CGAAGGCGGG TCTCTGGGCC 701 GATACTGACG CTGAGGAGCG AAAGCGTGGG GAGCGAACAG GATTAGATAC 751 CCTGGTAGTC CACGCCGTAA ACGGTGGGTG CTAGGTGTGG GGGACTTCCA 801 CGTTCTCCGT GCCGCAGCTA ACGCATTAAG CACCCCGCCT GGGGAGTACG 851 GCCGCAAGGC TAAAACTCAA AGGAATTGAC GGGGGCCCGC ACAAGCGGCG 901 GAGCATGTGG ATTAATTCGA TGCAACGCGA AGAACCTTAC CTGGGCTTGA 951 CATGCACTGG AAACCGGTAG AGATATCGGC CCCCTTGTGG CCGGTGTACA 1001 GGTGGTGCAT GGCTGTCGTC AGCTCGTGTC GTGAGATGTT GGGTTAAGTC 1051 CCGCAACGAG CGCAACCCTC GTTCCATGTT GCCAGCGCGT TATGGCGGGG 1101 ACTCATGGGA GACTGCCGGG GTCAACTCGG AGGAAGGTGG GGATGACGTC 1151 AAGTCATCAT GCCCCTTATG TCCAGGGCTT CACACATGCT ACAATGGCCG 1201 GTACAAAGGG CTGCGAAACC GTGAGGTGGA GCGAATCCCA TAAAGCCGGT 1251 CTCAGTTCGG ATCGGGGTCT GCAACTCGAC CCCGTGAAGT CGGAGTCGCT 1301 AGTAATCGCA GATCAGCAAC GCTGCGGTGA ATACGTTCCC GGGCCTTGTA 1351 CACACCGCCC GTCACGTCAC GAAAGTCGGT AACACCCGAA GCCCGTGGCT 1401 CAACCCGCAA GGGGGAGAGC GGTCGAAGGT GGGACTGGCG ATTGGGACGA 1451 AGTCGTAACA AGGTAGCCGT ACCGGAAGGT //

RDP data	:	Small Subunit rRNAs (Prokaryotic)
User data	:	aligner_16522
Columns	:	1455 positions aligned well across all uploaded sequences
Date	:	Thu Sep 2 19:21:22 1999

raw_16522	1	`~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GCUCAGSMCGAGCUGGCYKN`	`GUGCUU`	`A`	`AACACAUG`	`C`	`CAAGUCGAGCGGUAAGGCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUUGGAAACGAGGUCUAAUACCGGAUACGA`	`CCCUUGAAGGCAUCUUUGAGGG---------------`	UGGAAAGUUCCGGCGGUAUGGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACCCCGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGACUUCCA-CGUUCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCGGUAGAGAUAUCGGCCCCCUUGUGGCCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAAACCGUGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCCGUGGCUCAACCCGCAAGGGGGAGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGU...................
Asy.mirum	2	`.........................................U-GGC-GGC-`	`GUGCUU`	`^`	`AACACAUG`	`^`	`CAAGUCGAGCGGUAAGGCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUGGGAAACUAGGUCUAAUACCGGAUACGA`	`GCCU--U-C-----------CCN-CAUGGG-GUUGGU`	UGGAAAGUUCCGGCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGACGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACGGUAGGUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACCCCGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGACUUCCA-CGUCCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCAGUAGAGAUAUUGGCCCCCUUGUGGCCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGUGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCCGUGGCCCAACCCGCAAGGGGGGGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGU...................
Lz.albicap	3	`..............................C-GAAC-GC--U-GGC-GGC-`	`GUGCUU`	`^`	`AACACAUG`	`^`	`CAAGUCGAACGGUAAGCCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCCUGACUCUGGGAUAAGCCUUGGAAACGAGGUCUAAUACCGGAUAUGA`	`CACU--G-A-----------ACUGCAUGGU-UUGGUG`	UGGAAAGUUCCGGCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCGGCCGUGAAAACUUGGGGCUUAACUCCAAGCUUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGGCUUCCA-CGCCCUCUGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGG-ACUAGAAAGCUCUAGAGAUAGAGCCUCCCUUGUGGCUGGU-UCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCCAUGUUGCCAGCACGUAAUGGUGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGCGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAG-CCGUGGCUCAACCCGCAAGGGGGGGAGACGUCGAAGGUGGGACUGGCGAUUGGGGUGAA................................................
Asy.mirum2	4	`..........AGUUUGAUCCUGGCUCAGGAC-GAAC-GC--U-GGC-GGC-`	`GUGCUU`	`^`	`AACACAUG`	`^`	`CAAGUCGAGCGGUAAGGCCCUUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUGCCCUGUACUCUGGGAUAAGCCUGGGAAACUAGGUCUAAUACCGGAUACGA`	`GCCC--U-UC----------CCCGCAUGGG--UUGGU`	UGGAAAGUUCCGGCGGUACAGGAUGGACCCGCGGCCUAUCAGCUUGUUGGUGGGGUAAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGACGACGGCCUUCGGGUUGUAAACCUCUUUCAGCAGGGACGAAGCGCAAGUGACAGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCNAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUC-CGUCGGCCGUGAAANCUUGGGGCUUAACCCCGAGCCUGCGGUCCAUACGGGCAGACUUGAGUUAGCGC-GGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGAGCUAGGUGUGGGGGACUUCCA-CGUCCUCCGUGCCGCACGUAACGCAUUAAGCUCCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCAGUAGAGAUAUUGGCCCCCUUGUGGCCGGU-GUACAGGUG---CAUGGCUGUCGUCAGCU-GUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUCUUCCAUGUUGCCAGCGCGUUAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGNCGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCUAAGCCGUGAGGUGGAGCGAAUCCCAUAAAGCCGGUCUCAGUUCGGAUUCGCGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCCGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCCAAGCCCGUGGCCCAACCCGCAAGGGGGGGAGCGGUCGAAGGUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGCUAG-CGUACCGGAAGGUGCGGCUGGAUCACCUCCUU
Sct.longis	5	`CUNAUUGGAGAGUUNNAUCCUGGCUCAGGAC-GAAC-GC--U-GGC-GGC-`	`GUGCUA`	`^`	`AACACAUG`	`^`	`CAAGUCGAGCGGUAAGGCC-UUCGGGGUACACGAGCGGCGAACGGGUGAGUAACACGUGGGUAACCUNCCCUGUACUCUGGGAUAAGCCUGGGAAACURGGUCUAAUACCGGAUACGA`	`CCUR--U-C-----------ACCGCAUGGU-GGGGGG`	UNGAAAGUUCCGGCGGUAUGGGAUGGACCCGCGGCCUAUCAGCUNGUUGGUGGGGUNAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUNAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUNUUUCAGCAGGGACGAAGCGCAAGUGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCCAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUUGCGUCGGCUGUGAAAACUUCACGCUNAACGUGGAGCCUGCGGUCGAUACGGGCAGACUUGAGUUCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUGCUAGGUGUGGGGGACUNCCA-CGUCCUCCGUGCCGCAGCUAACGCAUUAAGCACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUNAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGC-ACUGGAAACCAGUAGAGAUAUUGGCCCCCUNGUNGCCGGU-GUACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUYGUUCCAUGUUGCCAGCGCGUAAUGGCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUNAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAGAGGGCUGCGAAGCCGUGAGGUGGAGCGAAUCCCACAAAGCCGGUCUNAGUUCGGAU-CGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGYUUNGUACACACCGCCCNUCAUGUCACGAAAGUCGGUAACACCCGAAGCCCGUGGCCCAACCCGUAAGGGCGGGAGCGGUCGAAGGUGGGACUGGCGAU.........................................................
Kt.virido2	6	`...................................................`	`......`	`^`	`.......G`	`^`	`CAAGTCGAGCGGTAAGG-CCTTCGGGGTACACGAGCGGCGAACGGGTGAGTAACACGTGGGCAACCTGCCCTACACTCTGGGATAAGCCCGGGAAACTGGGTCTAATACCGGATATGA`	`CTTC--G-CG----------GTCGCATGGTCGTGGGG`	TGGAAAGTTCCGGCGGTGTAGGATGG-CCCGCGGCCTATCAGCTTGTTGGTGGGGTAGTGGCCTACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGAAAGCCTGAGCCAGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAGCGCGAGTGACGGTACCTGCAGAAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGTTTGTCGCGTCGACTGTGAAAACCTACAGCTTAACTGTGGGCTTGCAGTCGATACGGGCAGACTTGAGTTCGGTAGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGGCGAAGGCGGGTCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCGACGCGTAAACGGTGGGCGCTAGGTGTGGGGGTCTTCCAC-GACTTCCGTGCCGTAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGCTTGACATG-CATTGGAAACCTGCAGAGATGTAGGCTCCCTTGTGGCCGGTG-CACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCCATGTTGCCAGCGCGTAATGGCGGGGACTCATGGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACACATGCTACAATGGCCGGTACAAAGGGCTGCTAAGCCGTGAGGTGGAGCGAATCCCAGAAAGCCGGTCTCAGTTCGGAT-CGGGGTCTGCAACTCGACCCCGTGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGTAACACCCGAAGCCCGTGGCCCAACCCGTAAGGGGGGGAGCGGTCGAAGGTGGGACTGGCGATTGGGACG..................................................