Alignment Slices Analysis Command FAQ
Overview
This FAQ contains information related to using the online Alignment Slices Analysis Command function. Please direct all corrections and additions to RDP-II General Support (rdpstaff@msu.edu). This FAQ can be found on the Web at http://www.cme.msu.edu/RDP/docs/ali_slices_faq.html. Information in this FAQ is primarily based on e-mail received via the RDP-II Support page linked at the bottom of the analysis form.
    Frequently Asked Questions
  1. Q: What does Alignment Slices do?
    A: Alignment Slices presents a compressed view of (up to five) vertical alignment slices, with identical neighboring sequences represented only once. Differences in the nucleotide bases between adjacent sequences are highlighted in red. This output is useful for examining probe candidates, covariation, or for simply browsing a region of an alignment.


Last updated on 09/13/1999.